Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 210 2e-49 seq3 123 2e-23 seq2 116 4e-21 seq82 114 1e-20 >seq19 Length=533231 Score = 210 bits (232), Expect = 2e-49 Identities = 556/834 (67%), Gaps = 35/834 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || |||||||| Sbjct 112650 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTT 112591 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||||| || ||||||| || | ||| || || ||| Sbjct 112590 GTGGCCTTGTAAACCTTCTCGTTGCCGAG-AG--CGACGAGTAGACGGTCAGCGACAAAC 112534 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGACGCACCGGC-AGCGCT 132798 || ||||| ||| ||| |||| | |||| | || ||||| |||| || || || Sbjct 112533 TCAATGTACTGCTTCATCAGGTT--GGAATTCATGCCAAGCAGG-GCACAGGGGAGAGCC 112477 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 || ||||| || ||||| |||| ||| || || | ||| ||| | | | Sbjct 112476 TCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCCTGGATCATCTGC 112417 Query 132859 GCGCT----CGGCCGTTGCACCAAATGCT--TGAACATCAAGCAAGCAAAGTCGCAATGC 132912 ||| ||||| ||| | ||| |||| | | ||| ||||||||| || Sbjct 112416 TTGCTAGCACGGCCCTTG----AGATGGGAGTGAAGA--AGGCAGGCAAAGTCGGTGTGA 112363 Query 132913 AAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGT 132972 | |||||| || | || ||||| |||||| ||| ||||| |||||||||||||| || Sbjct 112362 AGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGC 112303 Query 132973 TTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCG 133032 || |||||||| || |||| ||| || || ||||||| ||||||||||| ||| Sbjct 112302 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCG 112243 Query 133033 AAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCC 133090 || || ||||| || | | | || || | || ||| ||| |||||| || | |||| Sbjct 112242 AAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTG--GATCCATCGAATGGCCC 112185 Query 133091 ATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCT 133150 | || ||||| | | || ||| || || || || | ||||| | | | | || ||| Sbjct 112184 AGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGA--AGAGGTAGGTTCG 112127 Query 133151 CTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208 || ||| | | ||||||||| ||||| ||||| | || ||||| | || Sbjct 112126 CTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAATATT 112067 Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| |||||| || ||||| ||||| || ||||| | ||| || || Sbjct 112066 CTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCT 112007 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||||| || || || |||||||| ||||| || || ||||| ||||| || | Sbjct 112006 GAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAGGCAAGGAT 111947 Query 133329 GTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTT 133385 ||| |||||| |||||| | ||| || | ||| ||| | ||||| Sbjct 111946 GTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGGAGATCCTT 111887 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| || || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 111886 GGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 111833 >seq3 Length=1379917 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || |||||| | | Sbjct 687127 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 687068 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| ||||| |||||| Sbjct 687067 GACACCATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACC 687010 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| ||||| || || || |||| || ||||| ||||||| Sbjct 687009 AACAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACA 686950 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| | || ||||| ||||| || ||| || | || || Sbjct 686949 ACATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 686901 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || |||||| || |||| | | | Sbjct 687345 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCG 687286 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||||||||| | ||||| ||||| || Sbjct 687285 ACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCCTG 687227 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 687226 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAG 687167 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | || || ||| | || || || Sbjct 687166 GAATCCACACTTCATCTCGTCCTCCG 687141 Score = 104 bits (114), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || ||||| | | | Sbjct 686899 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 686840 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| || ||| | |||| Sbjct 686839 GACACTATTGACAACG--TGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCCCCTGACC 686782 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || |||||||| |||| ||||| | | |||||||| Sbjct 686781 AGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACA 686722 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 686721 ACATCCAGAAGGA 686709 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||||||| |||| || ||| | || Sbjct 687637 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 687578 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| || || | ||||| Sbjct 687577 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 687518 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || || | ||||||||| || |||||| Sbjct 687517 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAAC 687458 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || || || Sbjct 687457 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCG 687423 >seq2 Length=1436644 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 785652 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 785593 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 785592 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 785534 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 785533 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 785474 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 785473 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 785438 >seq82 Length=1669964 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 1275063 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1275122 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 1275123 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 1275182 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 1275183 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1275242 Query 38433 G 38433 | Sbjct 1275243 G 1275243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172281070720