Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 237 2e-57 seq44 84.2 3e-11 >seq12 Length=2665234 Score = 237 bits (262), Expect = 2e-57 Identities = 460/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| ||||||||||| || || | | |||||| | | || | ||||| || || Sbjct 1148579 CTTGTGTTTACGTTTGAATTCGTTAACGAAGTGGCTGACCAGACGGTTGTCGAAGTCCTC 1148520 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 1148519 ACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 1148460 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | |||||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 1148459 GAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGTTGCGCTCACC 1148400 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| || || || || || || || || || || || || Sbjct 1148399 CTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 1148340 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| ||||| || || | ||||| || || || || || || || ||||| Sbjct 1148339 GAGAACGTTGAGGCCGGCGATGAGACCAGCATCCTTGGTGGCCTGACGCTGAGAGTCGTT 1148280 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| |||||| || || || || Sbjct 1148279 GAAGTAGGCAGGGACGGTGACAACAGCGTTGTTGACAGTCTCACCGAGGTAAGACTCAGC 1148220 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | || ||| ||||| || | ||| | || ||||| || | | || | ||| | Sbjct 1148219 AGTCTCACGCATCTTGGTGAGGATCATGGCAGAGATCTCCTCGGGAGTGAAGTTCTTCTT 1148160 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||||| || || ||||| || || | ||| || |||| | ||| | | | Sbjct 1148159 CTCACCCTTGAACTCAACCTCGATGACGGGCTT---GCCAGCCTTGTCGATGATGGTGAA 1148103 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||||||| | ||||||| || | ||||| | ||||| | || Sbjct 1148102 GGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGACCGATCAATCG 1148043 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | |||||||||||| |||||||| || || || || Sbjct 1148042 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCC 1147983 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| || || || || || Sbjct 1147982 AATGAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTGCGGTTACCCTG 1147926 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 1147925 GTCGTTGGCGATGATATC 1147908 Score = 158 bits (174), Expect = 2e-33 Identities = 366/545 (67%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | | ||| || |||||||| | | || Sbjct 849207 AGGTCCTCGAAACGGGCACGGGTGATGGTCATCTGGAAGTCCTCGCCGTCGAAGAGAGAG 849148 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 849147 TCGATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 849090 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 849089 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTGGACTTTCGGG 849030 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| | || | | ||||| || | |||||||| || Sbjct 849029 TGAACTCCTTCTTGCAGTGATCGA-GAAGGTTTGTGTCGAAGTCCTGGCCACCCAAATGG 848971 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || || || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 848970 GTATCACCAGCAGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 848911 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | || | | |||| Sbjct 848910 TCGAAAGTACCACCACCGAGATCGTAGATGAGGACGTTGCGCTC--CTTC-TCGGACTTA 848854 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 848853 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGGACG 848794 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| |||||| Sbjct 848793 TTAAGACCAGCGATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 848734 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 848733 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 848674 Query 7775 TTCAT 7779 ||||| Sbjct 848673 TTCAT 848669 Score = 123 bits (136), Expect = 3e-23 Identities = 534/844 (63%), Gaps = 3/844 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| || ||| ||||| || || || || Sbjct 1149675 TCATCCTCCTCCTTGTACTTCTCGGCATCGCTGAGCATGCGCTCAATCTCCTCCTTGGAC 1149616 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 1149615 AGGCGGCCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTTCCAGTGCCCTTCTCGACG 1149556 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 1149555 GCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAAGTGACCTCAATCTGGGGAACA 1149496 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | |||||||| || | || || | || | | |||| ||| | Sbjct 1149495 CCACGGGGGGCAGGGGGAATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTG 1149436 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 1149435 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACACCAGGCTGGTTGTCGGAGAAG 1149376 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 1149375 GTAGAGAAGACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 1149316 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || || | || ||||| ||||| | || || | || | | Sbjct 1149315 ATCATACCACCAGCGGTCTCAATACCGAGAGAGAGAGGCGCGACATCGAGAAGGAGGATC 1149256 Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | | ||||| | | ||| || || ||||| | || ||| Sbjct 1149255 TCGTTGGTGGACTTGCTGGAGGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 1149196 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || | || || ||||| || || || Sbjct 1149195 TAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCG 1149136 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | || | ||||| || || ||||||||||| | ||||| || | Sbjct 1149135 GTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGG 1149076 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || |||||||| | ||| ||| ||||| || | ||| Sbjct 1149075 ACGAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGAT 1149016 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || ||||| || || || ||||| ||||| || ||||| || Sbjct 1149015 CGGAAGAGATCCTGGCAAAGCTCCTCGAATCGGGCTCGGGTGATGGAGGTGTAGAAGTCG 1148956 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| | | || || || || || | || || || | ||||| | |||||| Sbjct 1148955 ATACCCTCGAACAGAGAGTCGATCTCGATAGAGGTCTGAGCGGAAGAAGAAAGGGTTCGC 1148896 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || |||||||| || || || | ||| || || ||||| ||| ||||| ||| Sbjct 1148895 TTGGCTCGCTCACAAGCAGTGCGAAGACGTCGCAGAGCACGGACGTTGGTGGAAAGATCC 1148836 Query 7406 TTCT 7409 |||| Sbjct 1148835 TTCT 1148832 >seq44 Length=1921322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 224/338 (66%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| ||||||||||| || || || || ||| | ||||| || |||| ||| Sbjct 1157930 TCGAAATCCTCACCACCCAAATGGGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 1157989 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || ||| ||| Sbjct 1157990 TTCTGGATCTCAAGGATAGAGATATCGAAGGTACCACCACCAAGATCGTAAACAGCGACG 1158049 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| | || ||| || |||||||| || | || || || || || || Sbjct 1158050 ATGCGGTCGGCCTC------CTTCTCAAGACCGTAGGCAAGGGCGGCAGCGGTAGGCTCG 1158103 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TGT 7693 || | | ||| ||| ||| || || || || ||| | ||||| || || ||| ||| Sbjct 1158104 TTGACGACACGGAGAACGTTGAGACCGGCGAT--TTGACCGGCATCCTTGGT-GCTCTGT 1158160 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || |||||||| ||||| || || || || ||||| |||| | ||| |||| | Sbjct 1158161 CGCTGAGAATCGTTGAAGTAAGCAGGAACGGTGACGACAGCGTTCTTGATAGGCTTAGAG 1158220 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || || | || ||| | || ||||| ||| | || || Sbjct 1158221 AGGTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 1158258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132141049720