Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq66 253 2e-62 seq15 116 4e-21 seq24 105 8e-18 >seq66 Length=1847925 Score = 253 bits (280), Expect = 2e-62 Identities = 1180/1851 (64%), Gaps = 59/1851 (3%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| | |||||| || ||||| || || ||||||||| |||||| || | ||| Sbjct 1061242 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 1061301 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | || ||| || ||| | ||| | ||||| |||||| Sbjct 1061302 ATGCTGGTGATCTTGCCCATCGTGGGATCCTTCATGTGAATGTTGAGGGACTGGGACTGA 1061361 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTTC 109574 |||||||| ||| || || || ||||| | || | | | ||| ||| || Sbjct 1061362 TCGATGAAAGCACCTCGGTCGGCAGCCATCTGGACAA----CCTGGCGCTGAGAAATCTC 1061417 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| ||||||||||| | | ||||| || | || |||| |||||| |||||||| Sbjct 1061418 CCAAACAGTCTTGTAAAGAGCCTTGACGTCGGCAGGGATGTTGGGGATGTTCTGAATAGA 1061477 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 || | | | || | | |||||| | | ||||| | || | | || Sbjct 1061478 ACCGTTATCGGAAATAATACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACAAG 1061537 Query 109695 ATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGA 109750 ||| | |||| || | ||||| || || ||||||||||| || || Sbjct 1061538 ATCCTTGAGCAACCAGGGG----TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCT 1061593 Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 |||| ||||| | ||||| || ||||| ||||| ||||| || || || || | || Sbjct 1061594 GGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTAC 1061653 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCT 109870 || || ||||| || || | ||| |||||||| |||| ||| | ||||| || || Sbjct 1061654 TGGCAGTAGGCATAGGGGCAAGGAGCAGACTGTTACGGATACCGTGAGTCTTAACATCCT 1061713 Query 109871 CACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTG 109930 | || | ||||| || || | | | | || | | |||||| || Sbjct 1061714 CTCGAAGGCTCTCCCAGTCCCAAAGGTCGGAA------GGCTTGACGTTCCACATGTCGA 1061767 Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990 || || | |||||||| || |||||||||||||| | ||| | ||||| ||| Sbjct 1061768 ACTGGAGGATACCCTCAGAGGCGGGAGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCT 1061827 Query 109991 CGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049 |||||||| | | | || | | || || || || || || |||||||| || || Sbjct 1061828 TGGCCAACT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGC--- 1061883 Query 110050 TTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATC 110105 || |||| | || |||| | | |||||||| | | || || || || |||| Sbjct 1061884 TTGTTGAGCTCTCTAGCCTCTGGAGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATC 1061942 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT 110165 || |||||||| ||||| ||||| || || || || |||||| | ||||| Sbjct 1061943 AGCAAGACCCTGTACACCAAGACCGATAGGTCGGTGACGCATGTTGCTGTTGCGAGCCTC 1062002 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 || || ||||| |||| ||||||| | || | || ||| || | Sbjct 1062003 TTGCACAGGGTAGTGGTTGACATCGATGATCTTGTTCAAGTTGCGGACAACAACCTGACT 1062062 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGA 110284 || | ||| || || | | |||| | | | || | || |||| | || | Sbjct 1062063 GACCTGATGCAGCTTCTTGAAATCATA-GCAAGCCTCATCATAGTTGATGAAAGCAGGCA 1062121 Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 | |||| || ||||| ||||| |||| ||| || | | ||| || | || | Sbjct 1062122 GGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCT 1062181 Query 110345 CCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGC 110404 | || |||| || || || ||| || | ||||||||| || ||| ||| | Sbjct 1062182 CAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTAC 1062241 Query 110405 ATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCT 110464 | |||||||| || |||||| | ||| | || || || ||||| | || ||| ||||| | Sbjct 1062242 AGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCAT 1062301 Query 110465 TCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGG 110521 ||| | | || | ||| || | ||||| | | ||||||| ||||||||| Sbjct 1062302 ACCAAAGCTTCTG-GGCCTTGATGGACTTGCG--ACCCTTACCTTCCCTCTCGTACTTCT 1062358 Query 110522 TGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGAC 110581 ||| | | ||||||| || | ||||| || | |||||| || || ||| | Sbjct 1062359 CGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 1062418 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | | ||||| ||| | ||| || |||||| | ||||||||| |||||||| ||||| | Sbjct 1062419 ACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGA 1062478 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 ||| ||| ||||| ||| || |||| || | ||| ||||| || || || | Sbjct 1062479 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 1062538 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGAC 110761 || || | || ||| | |||||| || || || |||| ||| | | || | | | Sbjct 1062539 GGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACC---AGGTC 1062595 Query 110762 G------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | ||| |||| | ||| ||||| || ||| |||||||| | |||||||||| Sbjct 1062596 GCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAA 1062655 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGT 110875 || || | |||| ||| || ||||| ||| ||| | ||||||| || || Sbjct 1062656 CAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGT 1062715 Query 110876 GGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTA 110934 || || | |||||||||||| ||| ||| ||| ||||| ||| |||| ||| Sbjct 1062716 GGGCATTGAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCT-TGAGGGTA 1062774 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 |||| ||||| ||||| || |||| | ||| | ||||| ||||| | ||| Sbjct 1062775 TCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGG 1062834 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GG 111052 || |||| || || || |||||||| || || | ||||| ||| ||| |||| || Sbjct 1062835 GGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGG 1062892 Query 111053 ACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGTGAATACCAATGGC 111110 |||| ||||||||| || | | | | | | ||| | || |||||||| | Sbjct 1062893 ACATGAGGTTGTATGTCTCCAAGAC--ACGCTCAATATCATCGCCCCATATACCAATAGA 1062950 Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTA 111170 || ||||||| ||| | ||||| ||||| | ||| || |||| | ||||| Sbjct 1062951 CACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTA 1063010 Query 111171 ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 ||| | ||||||| ||||||||| | | ||||||||| || Sbjct 1063011 TGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTC 1063061 >seq15 Length=801649 Score = 116 bits (128), Expect = 4e-21 Identities = 188/264 (71%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || |||||||| || ||||| ||||||||||| ||||| ||||| | || || | || Sbjct 331105 AAGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCC 331163 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | ||| | | ||| |||||| || |||||||| | |||||||||||||| ||||| Sbjct 331164 GGACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTT 331223 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTC-CA 11913 ||| |||||||| | ||| | || ||| | || ||| | |||||||| | || | Sbjct 331224 ACCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACCGAGGTCGCT 331283 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAG 11973 || | ||||| ||||| || || || || | |||| |||||||||||||| Sbjct 331284 AA--ACTTTTCAGGGTTCTTCAGAAACTCGACGACTTCCTGGAGTTCCTCCTTGGCTTCA 331341 Query 11974 TCGATACCCTCAACATCGGTGAAA 11997 || ||| | |||||| ||||| Sbjct 331342 TCACAACCGTGGACATCGTTGAAA 331365 >seq24 Length=378245 Score = 105 bits (116), Expect = 8e-18 Identities = 259/383 (68%), Gaps = 30/383 (8%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT-- 11645 ||| |||||| ||||| || ||||||| |||||| | ||| ||| ||||| ||||| Sbjct 355722 TGTTGAAACCATCCATCTCAGTGAGAATCTGGTTCAGGGTCGCTTCCCGCTCGTCGTTAC 355663 Query 11646 ----GGAG----GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCG 11697 | || ||| | |||| || | | || | | ||||||||||||||| Sbjct 355662 CACCGAAGCCTCGGCCACTCTCCTGTCGGGCACGTC----CAATTGCGTCAATCTCATCG 355607 Query 11698 ATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG---AAAAGTTCACGTACACGC 11754 || || | |||||| || || || |||| ||| || || || || || || Sbjct 355606 ATAAAGATGATACAGGGAGCATTCTTGCG-GCCT--TCGGCAAACAGATCTCGCACGCGA 355550 Query 11755 TTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGG 11812 | || ||||| ||||||||||||||||| | | | || | ||||||| ||||| Sbjct 355549 GAAGGACCGACACCCACGAACATCTCAACGAATTCGGAACCGCTCA-CACTGAA-GAAGG 355492 Query 11813 GAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCAC 11872 | || |||||| ||||| |||| || || | ||||| || |||||||| | | Sbjct 355491 GCACTCCAGACTCGCCAGCCGTGGCCTTGGCAAGCAACGTCTTTCCAGTACCAGGAGGGC 355432 Query 11873 CAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC-CAAAGTAGCGCTCAGGCT 11929 |||| || | || || || |||||||||||||| |||| | || | |||||||| Sbjct 355431 CAGCCAGGATAGCACCTCGAGGGATCTTGGCACCCAGCTTCTCGAACT---TCTCAGGCT 355375 Query 11930 TCTTGAGGAAGTCCACAATCTCC 11952 ||| |||||| |||| |||| Sbjct 355374 GCTTCAGGAAGCTAACAAACTCC 355352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975388937400