Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 1e-13 >seq12 Length=2665234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/294 (68%), Gaps = 17/294 (6%) Strand=Plus/Minus Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745 |||||||| ||||||| | || |||||| ||||| || | |||| | | | |||||| Sbjct 2467536 TGAGGGTCATAACCCTTGACGGTGAAATCTTCTGCTTTCCAACCGTCAATGCT-TCCACC 2467478 Query 29746 CTCCTGTTTATC-------CTC-AG-TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGA 29796 || ||| || ||| || | |||||| | || ||||| | ||| || || Sbjct 2467477 CT----TTTCTCGAGAAATCTCTAGCTCTGGGAA-GTCTCGCGGCTCGCGCTCCAGTTGG 2467423 Query 29797 GTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAA-A 29855 |||| || | || ||||| || ||||| || ||||| || |||| ||| || | Sbjct 2467422 ATCTTAAGAGCATCAACGTGGTCGAGGTACACATGAGCATCACCCATAACATGGGTAAGA 2467363 Query 29856 CTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGC 29915 || ||| || | || | ||||| || | ||||| || | || | ||| || || Sbjct 2467362 CT-TCCAGGAACCAGGTCACAAACGTGCGCAAGCATGTGTGTCAATAGGGCGTAACTAGC 2467304 Query 29916 GATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||| ||||| || ||||| |||||||| | ||||||||||| | |||||| Sbjct 2467303 AATGTTGAAGGGAACACCGAGACCCATGTCGCAAGACCTCTGGTACAACTGACA 2467250 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 ||||| || || || || | ||||||||| || ||||| || ||||| || || |||| Sbjct 2467020 TACTCGGCACCAAAGTGTCGCCACTGGAAACCATACACAGGGCCCAGATCGCCAACTTCA 2466961 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT- 30278 | || | | || ||||| | || || | ||| || ||| ||||||||||||| Sbjct 2466960 CGATGGTTCAGTCCGAGGTTGTCAAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTA 2466901 Query 30279 -TACCCCCTTCTCGGAGAGCTCTTTGGAG-TTTGTGGACCCTCTGACGAACCACAGCAGC 30336 |||| |||| | ||| ||| || | || | ||| |||||| || |||||| || ||| Sbjct 2466900 ATACCGGCTTCGCTGAG-GCTGTTAGAAGATGTGT-TACCCTC-GATGAACCAGAGGAGC 2466844 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 || | || ||||| |||||| | || || |||||||| |||| Sbjct 2466843 TCGGCGACAACGGCGCGAGTAAAGACACGTTTCGTGGTGAGGAGAGGAA 2466795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617186657759