Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq66 414 2e-110 seq19 183 6e-41 >seq66 Length=1847925 Score = 414 bits (458), Expect = 2e-110 Identities = 1172/1762 (67%), Gaps = 94/1762 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | || ||||||| ||||| || ||||||||||| ||||| Sbjct 1061215 ACAGTGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCCAGTCTTG 1061274 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| |||| | || Sbjct 1061275 AGACCAAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCC-----ATC 1061322 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||||| || || | ||| |||||||| ||| || ||||| | | Sbjct 1061323 GTGGG-ATCCTT------CATGTGAATGTTGAGGGACTGGGACTGATCGATGAAAGCACC 1061375 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | | ||| || | |||||| || |||||| | | Sbjct 1061376 TCGGTCGGCAGCCATCTGGACAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAG 1061435 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| ||| | |||| | |||||||||||| | ||| || | | || | Sbjct 1061436 AGCCTTGACGTCGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAAT 1061495 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | || ||| | |||| || | || ||||| || Sbjct 1061496 ACGGTTCTT---CATGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCA 1061552 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| ||||| | || || | | |||||||| ||| || ||||| Sbjct 1061553 GGGGTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTA 1061612 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||||||||| | || ||||| || ||||| || || Sbjct 1061613 AGGCTCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGC 1061672 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC-CGAAG-CTCTGCCCAG 213083 | || |||||||| | | ||||| | | | | | ||||| |||| ||||| Sbjct 1061673 AAGGAGCAGACTGTTACGGATACCGTGAGT-CTTAACATCCTCTCGAAGGCTCT-CCCAG 1061730 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||||| | | || ||| ||| |||||||||||||| ||||| | ||| || Sbjct 1061731 TCCCAAAGGTCGGA-AGG--------CTTGACGTTCCACATGTCGAACTGGAGGATACC- 1061780 Query 213144 TTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 |||| |||| |||| | | | |||||||| || | ||||||||||| || Sbjct 1061781 ---CTCAGAGGCGGGAGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACT- 1061836 Query 213200 GCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 ||| ||| || |||||||||| ||||||||| ||||| |||| | ||||||||| Sbjct 1061837 GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTC 1061896 Query 213259 TGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGA 213318 | |||||||| ||| ||||||||| || |||| ||||||| || ||||| | Sbjct 1061897 TAGCCTCTGGAGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGTA 1061956 Query 213319 CCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAA 213377 | || | ||||| |||| ||| | || ||| ||| |||| ||| | || ||||| Sbjct 1061957 CACCAAGACCGATAGGTCGGTGACGCATGTTGCTGTTGCGAGC-CTCTTGCACAGGGTAG 1062015 Query 213378 AAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGG 213437 |||| |||||||||||||| | ||||||| | || | |||| || ||| Sbjct 1062016 TGGTTGACATCGATGATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGC 1062075 Query 213438 TACTCGTGATTGAACACGTAGC---CCCCGTC---CTGCACAAACTCAGGCAGGGCGATG 213491 | | ||||| | |||| || | || | | || |||||||||| | | Sbjct 1062076 TTC------TTGAAATCATAGCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGG 1062129 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 ||| ||||||||||| || ||||| | || | | |||||| |||||||| |||||| Sbjct 1062130 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1062189 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATC 213610 || || || |||||||||||| ||||||| ||| ||| ||||| | || | ||| Sbjct 1062190 AGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGG-TTGCTCTTGCGGTTACAGGCATC 1062248 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAG 213668 |||||| |||||| ||||| |||||||| ||||| | | || | |||| ||| Sbjct 1062249 CTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGA--TGGCATACCAA 1062306 Query 213669 AGGTACCTGGCCTTGA-CCACCCGCCTGACAGCT-CCGGGCGTAGCCTCGTACTGTTCGT 213726 || | | |||||||| || || ||| | || | | |||||||| |||| Sbjct 1062307 AGCTTCTGGGCCTTGATGGACTTGC--GACCCTTACCTTCCCT---CTCGTACTTCTCGT 1062361 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACA 213786 |||| | | || || | || || | | || || || || ||| |||| Sbjct 1062362 AGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACA 1062421 Query 213787 TGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 ||||| |||| || ||| || |||| || | || |||||| ||||| |||| ||| || Sbjct 1062422 TGAGGGTCCACTCTCCGTTCTTCTC-AACACGCTTCATGAAAAGGTCAGGGATCCAGAGG 1062480 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 || ||||||||| | || | ||| ||| || ||| || || ||||| || Sbjct 1062481 GCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGG 1062540 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 || || |||| || |||||||| ||||| | |||||| ||||| || || || | |||| Sbjct 1062541 AACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTG 1062600 Query 213966 ---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022 || ||||| || || | ||| ||||||||| || || | || || | Sbjct 1062601 TTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACA 1062660 Query 214023 CCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTC 214079 |||||||| ||| |||||||| || || || || ||||| | ||| | | | || | Sbjct 1062661 CCGTTGGA-TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGC 1062719 Query 214080 ATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCC 214139 || |||| || || ||||| || |||||| |||||||| ||| | | | || || Sbjct 1062720 ATTGAGA--CCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCA 1062777 Query 214140 ATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGC 214199 ||| ||| | |||||||| || | | | | ||||||||| || |||||||| Sbjct 1062778 TAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGG- 1062836 Query 214200 CTGGACGAG--CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | || | | |||| |||||| || |||||| |||||| | | |||||| | || | Sbjct 1062837 -TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACA 1062895 Query 214258 GGAGCCTGTAGGTCTCCAGGAC 214279 ||| |||| ||||||| ||| Sbjct 1062896 TGAGGTTGTATGTCTCCAAGAC 1062917 >seq19 Length=533231 Score = 183 bits (202), Expect = 6e-41 Identities = 487/736 (66%), Gaps = 25/736 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 112669 CTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 112610 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | || || ||| | || ||| | | || | Sbjct 112609 CATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCT-TCTCGTTGCCGAGAGCGACGAGTA 112551 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || ||||| |||| ||||| | ||| ||| || |||||||| | |||| Sbjct 112550 GACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAATTCATGCCAAGCAGGG 112491 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| ||||| ||||||| ||| || ||||| || | | || Sbjct 112490 -CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATG 112432 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAG------AGCATG 48130 | || ||| || | || | || | || |||| || | || | | Sbjct 112431 TCCT-------GGA-TCATCTGCTTGCTAGCAC-GGCCCTTGAGATGGGAGTGAAGAAGG 112381 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| |||| | ||| || || || ||||||| ||||||||||| | | Sbjct 112380 CAGGCAAAGTCGGTGTGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 112321 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || ||||||||||| || | || || | || ||||||| Sbjct 112320 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 112261 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||| || || | | | || | || || |||||| | Sbjct 112260 ATACCCTCGACGGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 112201 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || |||||||| |||||||| |||||| || || || || | || | Sbjct 112200 ATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTG 112141 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 112140 AAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAATAG 112084 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| | |||||| || ||| ||||| ||||||||| | |||||| Sbjct 112083 GTCTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGG 112024 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| || || | ||||| ||| | || ||||| ||||| || ||||| |||||| Sbjct 112023 ATCTGGACCTCGCCGCTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCA 111964 Query 48548 GCAAAGAAGGCAAGGA 48563 || ||||||||||||| Sbjct 111963 GCGAAGAAGGCAAGGA 111948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531833534720