Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq66 187 7e-42 seq19 131 5e-25 seq12 125 2e-23 seq1 87.8 5e-12 >seq66 Length=1847925 Score = 187 bits (206), Expect = 7e-42 Identities = 587/900 (65%), Gaps = 17/900 (2%) Strand=Plus/Plus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| |||||| ||||| || ||||||||| | ||||||||||| || | | Sbjct 1062178 ATCTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 1062237 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 ||||| ||||||||||| || ||| | ||| |||| ||||| |||| || || || || Sbjct 1062238 TTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATG 1062297 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| | |||||| ||| || ||| Sbjct 1062298 GCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTC 1062357 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 || || | | || |||||||| || || || |||||||||| | |||| Sbjct 1062358 TCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGG 1062417 Query 155880 CAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| | || || | | |||||| ||| || | ||| | Sbjct 1062418 CACATGAGGGTCCACTCTCCGTTCTTCTCAA---CACGCTTCATGAAAAGGTCAGGGATC 1062474 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | || ||| ||||| | || |||||| | ||||| ||||| || || Sbjct 1062475 CAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGA 1062534 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || | ||||| || ||||| || || ||||||||| |||| Sbjct 1062535 TCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGT 1062594 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| ||||||||||| || || || ||||| || |||||||||| |||||||||| Sbjct 1062595 CGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGA 1062654 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | || ||| ||||| || || ||||| || ||| | || |||| | || | Sbjct 1062655 ACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGG 1062714 Query 156174 TGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGT 156232 || || || ||||||||||| | |||| || ||||| || || ||| | || Sbjct 1062715 TGGGCATTGAGACCAATACCACCAG-CCATCTTGGAAATCATGGCACAGGTCTTGAGGGT 1062773 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCACGAACTTAATT 156291 || | ||||| ||||| || || | ||| | | ||| |||| ||| | | Sbjct 1062774 ATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGA-AGCATGAAGAAAGCT 1062832 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 | ||| | || || ||||||||||| || || || | ||||| | || |||| | | Sbjct 1062833 GGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGG 1062892 Query 156352 ACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT--TAGACCCGTGAATACAGATAGA 156409 |||| | |||||||||| | ||||| || | | ||| | |||| ||||| Sbjct 1062893 ACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCATCGCCCCAT--ATACCAATAGA 1062950 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTA 156469 || | ||| ||| ||||||||||| || |||||| || ||||| || ||||| Sbjct 1062951 CACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTA 1063010 Query 156470 TGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 || || |||| || || || || || || | | | |||||||||| ||| |||| Sbjct 1063011 TGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAAT 1063070 >seq19 Length=533231 Score = 131 bits (144), Expect = 5e-25 Identities = 398/612 (65%), Gaps = 10/612 (2%) Strand=Plus/Plus Query 133339 GATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATAC 133398 |||||| ||||| || || || ||||| || ||||| || |||||||| || | Sbjct 112060 GATGGAGAATATTCACTCCGAGACCTATTCCCTGCTCATTGACACCTACATCAAGGAGCC 112119 Query 133399 CGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATC 133458 | |||| | | || |||||||| || |||| || || |||||| | Sbjct 112120 TGCCCAGCGAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 112179 Query 133459 TGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGC 133518 ||||||||| ||| |||||||||||||||| | | ||||| ||||| ||||| Sbjct 112180 TGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGC 112239 Query 133519 TTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAA 133578 || |||| || ||||| || || ||||| ||||| || ||| || || ||||| || Sbjct 112240 CTTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 112299 Query 133579 AAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGC 133638 |||||||| | | || || || || || ||||| || || || | || |||| Sbjct 112300 GAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGG 112359 Query 133639 ACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAA 133698 ||||||||||| |||||| | |||||||| | | || | | | ||| | Sbjct 112360 CCTTCACACCGACTTTGCCTGCCTTCTTCACTCCCATCTCAAGGGCCGTGCTAGCAAGCA 112419 Query 133699 TAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGC 133758 | ||| | || || ||| | || || || |||||| || || ||| | || Sbjct 112420 GATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGC 112479 Query 133759 TCTGCC--GTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTT 133816 ||| || ||||| | |||| |||||| |||||| ||| || ||||| ||| Sbjct 112480 TCTCCCCTGTGCC--CTGCTTGGCATGAATTCCAACCTGATGAAGCAGTACATTGAGTTT 112537 Query 133817 GTAGCTGACAG---ATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAAT 133873 || |||||| | | | | || || | || || ||| ||||| || | || Sbjct 112538 GTCGCTGACCGTCTACTCGTCGCTC---TCGGCAACGAGAAGGTTTACAAGGCCACAAAC 112594 Query 133874 CCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGG 133933 || ||||||| ||||||| ||| | ||| ||||| || ||||||||| | | Sbjct 112595 CCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 112654 Query 133934 GTAGCCGAATAC 133945 || || || ||| Sbjct 112655 GTCGCTGACTAC 112666 >seq12 Length=2665234 Score = 125 bits (138), Expect = 2e-23 Identities = 206/295 (70%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || |||||||| ||||| ||| | || || || || Sbjct 873142 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATGTAACCTGTTTCGGCAGTCTTGACCGCA 873201 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| | |||||| |||| || |||||||| | ||| || || Sbjct 873202 GTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTAGGGGTAAGA 873261 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | ||| |||||||||||||||| || ||||| || | || |||||| Sbjct 873262 CCACGAAGGTAAGAGTTCTCAACGAAACCACGAGCTTCGGGTGAGTAATCATCCTTGGTG 873321 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||||||| | || || | ||| | || ||||| || || ||||| | ||| Sbjct 873322 AAATGAGGCAGGGTGCGGTACTTGAAACCGAAAGGAATACGTTTGCCTTCAACAATTTGC 873381 Query 302812 TGTCCCAGGCACGA--AATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || | || || | ||||||| ||||| || | | | |||||||| || Sbjct 873382 TGACC--GACAAGAGCAGTCATCTGTGAAATGTTGATAGAAGAACCCTTGGAACC 873434 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 872365 AGAATTTCCTTGAGACGCGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 872421 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || |||| ||||||||||| || || || | Sbjct 872422 AAATGGAAAGTATTCAGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAA 872481 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 872482 ACACCAACCATTTCACCAGG 872501 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| ||| |||| ||||||||| |||||||| || | ||||||||||||||| | Sbjct 1121651 GCACCGTAAGCGATCAGACAATCACGCTCCATTTCTCCTAGACGCAGACCACCATCTCTG 1121710 Query 233333 GACCTACCCTGGACTGT---TTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAA 233389 || | ||| | |||| ||||||||| || | | || ||||| ||| ||| | Sbjct 1121711 GAACGACCTT---CTGTGGGTTGACGAGTCAAGATTGCTCGGGGACCTCGAGATCGAGAG 1121767 Query 233390 TTAATTTTATCTTTAACCATATGCTTCAG 233418 | || || |||| ||||| ||||| || Sbjct 1121768 TGCATCTTGTCTTGCACCATGTGCTTAAG 1121796 >seq1 Length=4337333 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | | || Sbjct 1427457 ATGAGTCCACAAATTTCGCAGACGTGGACTCGGAAAGCATCCGACACCTCAAACAAACGC 1427516 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || || ||||| | ||||||||||||||| ||||| || ||||| Sbjct 1427517 TCCTTCAAGAAAGCAGCAGCGCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 1427576 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || ||||||||||| ||||| | ||| || ||||||| Sbjct 1427577 CGGAGACCACCATCTCGAGCACGACCTTCCACAGGCTG 1427614 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||| ||| |||||| || || || ||||| || || ||||| |||| Sbjct 1427889 TGGGCAATTGTCATTCGAGAGGGAATGGCGTGAGGGTTGATAATAATATCGGGAGTCAGG 1427948 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||| |||||||||| | || ||| | ||||| || |||||||| Sbjct 1427949 CCTTCTCTGCTGAAAGGCATATCCTCCTG-TCGATAGGTAACACCAATGGTACCCTTTTG 1428007 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| ||||| |||||||| Sbjct 1428008 ACCGTGACGAGAAGCAAACTTGTCACCAAT 1428037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816034813971