Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 127 1e-24 seq3 109 4e-19 seq82 98.7 6e-16 >seq2 Length=1436644 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 785441 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 785500 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 785501 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 785560 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 785561 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 785620 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || |||||||||||||| || || ||||||||||| Sbjct 785621 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 785655 >seq3 Length=1379917 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| ||||||||| ||||| || || || ||| |||| |||| Sbjct 687426 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCC 687485 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 687486 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 687545 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 687546 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 687601 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || || | |||||| || ||||| |||||||| Sbjct 687602 GGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGAT 687640 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| ||||| | |||| | || Sbjct 686688 AGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGACCGTCC 686747 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||| || || |||||||| | || | ||||||||||| Sbjct 686748 TCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 686807 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | ||||| |||| ||| || ||| Sbjct 686808 TGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTC 686867 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 686868 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| | || | || || |||||||| || ||||| Sbjct 686936 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAA 686995 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||| || ||||| | || | ||||||||||| | || || || || | Sbjct 686996 GATAAGTCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCAC--A 687053 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| | |||||| || | || ||||| ||||| || ||||||| Sbjct 687054 T--TGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCT 687111 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||| ||||| Sbjct 687112 TGACGAAGATTTGCAT 687127 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| | ||| | || |||| Sbjct 687144 AGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 687203 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 687204 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCC 687263 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| |||| || |||||| Sbjct 687264 TGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTC 687323 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || ||||||||||| || Sbjct 687324 TTGCCAGTGAGGGTCTTGAC 687343 >seq82 Length=1669964 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| || || ||||| || ||||||| Sbjct 1275243 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 1275184 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| || ||||| | || | ||||||||||| | || || ||||| || Sbjct 1275183 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 1275127 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| ||||| |||||||| Sbjct 1275126 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTG 1275068 Query 34964 ACAAA 34968 || || Sbjct 1275067 ACGAA 1275063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692470541377