Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 seq2 87.8 4e-12 >seq3 Length=1379917 Score = 141 bits (156), Expect = 2e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct 686899 TACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAG 686958 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||||| |||||||| || ||||| ||||| |||| ||||| || |||| Sbjct 686959 AAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAG 687018 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || || ||| ||||| || ||||| || || || ||| | || Sbjct 687019 GAATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTCGATGGTGTCAGATGACTCG 687077 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || || || | ||||| || || || ||||| Sbjct 687078 ACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || ||||| || ||||| || || || || | | | | |||| Sbjct 686685 CGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGACCG 686744 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 686745 TCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 686804 Query 82716 TCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| ||||| || || || ||||| || || | | ||| || || | || || Sbjct 686805 TCTTGAATC-TTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGAT 686863 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 686864 AGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 Score = 84.2 bits (92), Expect = 4e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || || || || | || ||| || || || || || Sbjct 687153 TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGC 687212 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || || || ||||| ||||| ||||| || || ||||| Sbjct 687213 TTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTTC 687272 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || || || || ||||| | || || || | ||| || |||||||| || Sbjct 687273 GACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTG 687332 Query 82788 AACGTCTTTAC 82798 | ||||| || Sbjct 687333 AGGGTCTTGAC 687343 >seq2 Length=1436644 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || || | | || Sbjct 785438 CGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 785497 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| |||| || || || || || || || ||||| Sbjct 785498 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 785557 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || ||||| || || || || || || | || ||| Sbjct 785558 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 785617 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || || | ||||| || || |||||||| || Sbjct 785618 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 785655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826155888137