Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq44 111 4e-19 seq1 86.0 1e-11 >seq44 Length=1921322 Score = 111 bits (122), Expect = 4e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 |||||||||| || ||| ||||| ||| |||| | ||| ||||||||||| |||| Sbjct 223036 TGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAAAAGAAACTTGG 223095 Query 279933 TAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 | ||||| | |||| | | || | |||||||| || ||||| | | || || | Sbjct 223096 TCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAACGGCGTACCACC 223155 Query 279993 ACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 ||||||| ||||||||||| | ||| |||| ||||| || | ||| | | ||||| Sbjct 223156 ACGGTGAGGCGTCTCTTCAGCAGACCATTATAGGCCTTGCTCAGAACTTTGTCGGTTCAA 223215 Query 280053 ACAACTTAAATCTGCTTTCA-CCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAA 280111 ||||| | || |||||| | || | ||| | || |||||||| || | ||| Sbjct 223216 ACAACATCAA-CTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACTTGCCGGTGGCTCT 223274 Query 280112 GATCATGGTAGTGCTCGTTACAT 280134 ||| || ||| |||||||||| Sbjct 223275 GATGCTGCCAGTCCTCGTTACAT 223297 >seq1 Length=4337333 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 352851 TTGGAGACAAGTTCGCTTCTCGATCTGCTCAAAAAGGAACAATTGGAATGTTGCTCAGTG 352910 |||| |||||||| |||||||| | |||||| || || ||||| |||| | | | Sbjct 1428036 TTGGTGACAAGTTTGCTTCTCGTCACGGTCAAAAGGGTACCATTGG--TGTTACCTATCG 1427979 Query 352911 AAA--AGGATATGCCTTTCGACAAAAATGGCTTAAAACCTGACATTATTATTAATCCAAA 352968 | | |||||||||||||| || | | ||| | | || || |||||||| || || | Sbjct 1427978 ACAGGAGGATATGCCTTTCAGCAGAGAAGGCCTGACTCCCGATATTATTATCAACCCTCA 1427919 Query 352969 TGCGATTCCCTCTAGAATGACAATAGCTCA 352998 || ||||||||| |||||||||| || || Sbjct 1427918 CGCCATTCCCTCTCGAATGACAATTGCCCA 1427889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811537898763