Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq66 230 3e-55 seq15 84.2 3e-11 >seq66 Length=1847925 Score = 230 bits (254), Expect = 3e-55 Identities = 929/1440 (65%), Gaps = 45/1440 (3%) Strand=Plus/Plus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| |||||||| || ||| || | | |||| ||||| | ||||| || Sbjct 1061556 GTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGG 1061615 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || ||||| || || ||||||| || || | ||| ||| || ||||| || || | Sbjct 1061616 CTCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAG 1061675 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC-CTTGAGAACA-TCCCAGTCG 110845 | ||||||||||| | ||| | ||| | | | | || || | |||||||| Sbjct 1061676 GAGCAGACTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCC 1061733 Query 110846 TAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || || || |||| ||||||| ||||| || | || | || ||||| Sbjct 1061734 CAAAGGTCGGAAGGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGG 1061792 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCA 110963 |||||||| ||||| |||| ||| | | | ||||| | ||| | || | Sbjct 1061793 AGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG-GCAGTGA 1061851 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| ||||| || ||||| |||||||| | || | ||| | || || || | Sbjct 1061852 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1061911 Query 111024 CAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 | || | ||| || | || || |||| || ||||| || ||||| | ||| ||| Sbjct 1061912 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1061970 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCA 111139 |||| ||| ||||| || || | ||| || ||| || || || || || Sbjct 1061971 GGTCGGTGACGCATGTTG--CTGTTGCG-AGCCTCTTGCACAGGGTAGTGGTTGACATCG 1062027 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| | || | ||||| || ||| | ||| || || | ||||| Sbjct 1062028 ATGATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCA 1062087 Query 111200 AAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 | || || ||| |||| ||| | || ||||| | || || | |||||| Sbjct 1062088 TA---GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAA 1062144 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 ||||| |||||| | |||||| | || || || || | || || || Sbjct 1062145 ACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGG 1062204 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | ||||| ||||| ||||| ||| || ||||||||||| |||||| || Sbjct 1062205 ATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAG 1062264 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTAC 111435 || | || ||||| ||||| | | ||| || || | ||||| | || | | || | Sbjct 1062265 GGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG--- 1062321 Query 111436 AATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 |||| ||| | || | || ||| ||||||||| ||||||||| |||||||| || Sbjct 1062322 -ATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTC 1062380 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| ||||| ||||| || || || || || | || | ||| | || Sbjct 1062381 ACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTT 1062440 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 | |||||| ||||||||||||||||| || ||||| |||| || || || | Sbjct 1062441 CTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGC 1062500 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | ||| ||||| ||| | ||||||||||| | || ||| ||||| Sbjct 1062501 GCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTG 1062560 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATA 111729 ||| |||||||| |||| || | || || ||| ||| | |||| || || Sbjct 1062561 CCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTA 1062620 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 ||| || ||| ||| || || || ||||| |||| || ||| | ||| ||| || || Sbjct 1062621 GCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGT 1062680 Query 111790 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT----CCCAATACCCC 111845 || ||| || | ||| ||| | | || |||| |||||||| | Sbjct 1062681 ACCAGCAATGTAGGAGCCAGTGG----CACGGATTCGGTGGGCATTGAGACCAATACCAC 1062736 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| || || ||||| | | || || |||||||||||| || || Sbjct 1062737 CAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGT 1062796 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| | | | | |||||| || | ||| ||| || |||||||| |||| Sbjct 1062797 CCTCCTTCATATCAACCAAGAAGCATGAAGAAAGCTGGGGTTGAGGGGTACCAGCGTTGA 1062856 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 ||||||| || | || || ||| | | |||| |||||| || |||||||||||| Sbjct 1062857 AGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATGAGGTTGTATGTCTCCAA 1062914 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| ||||| || || || || || || | || ||||||| ||||| ||| || Sbjct 1062915 GACACGCTCAATATCATCGCCCCATATACCAATAGACACACGCATGATCATGTGCTGAGG 1062974 >seq15 Length=801649 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/294 (68%), Gaps = 14/294 (5%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAAA 11685 ||||||| || ||||||||||||||| | || ||| | || |||| | ||| Sbjct 331051 GCATCAAGTTCGTCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCGGCAG----TAAA 331106 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 ||| || || || | ||||| || |||||||| || ||||| |||| || | || | Sbjct 331107 GAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCGG 331165 Query 11746 GCA-CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 || | || ||| || ||| | |||||| || | ||||| |||||||| ||||| | Sbjct 331166 ACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTAC 331225 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTC-CAAA 11862 | ||||| || ||| | || ||| | || ||| | |||||||| | || | || Sbjct 331226 CGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACCGAGGTCGCTAA 331285 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | | || ||||| ||| ||||| || || | || | ||||| || ||||| Sbjct 331286 ACTTTTC-AGGGTT-CTTCAGAAACTCGACGACTTCCTGGAGTTCCTCCTTGGC 331337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031348416800