Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq66 246 4e-60
seq19 107 2e-18
seq15 107 2e-18
>seq66
Length=1847925
Score = 246 bits (272), Expect = 4e-60
Identities = 942/1452 (65%), Gaps = 69/1452 (5%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG--AAGACATTGATTCTG 104279
|| ||| ||||| ||||||| ||| | || ||||| |||||| | || ||||| ||
Sbjct 1062974 CCTCAGCACATGATCATGCGTGTGTCTATTGGTAT--ATGGGGCGATGATATTGAGCGTG 1062917
Query 104280 TCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCT 104337
|||||||||||||| || |||||| |||| | | ||| || || | || |||||
Sbjct 1062916 TCTTGGAGACATACAACCTCATGTCCAGCAAGTTCT--TCACCCATGCTTCCCCCACCCT 1062859
Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397
|||||| |||||||| || |||||| | || |||||| | | | | |||||
Sbjct 1062858 CTTCAACGCTGGTACCCCTCAACCCCAGCTTTCTTCATGCTTCTTGGTTGATATGAAGGA 1062799
Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457
|||| || |||||||||||| || || | | ||||| || || ||| |||
Sbjct 1062798 GGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGC 1062739
Query 104458 TGGGGGTATTGGG----ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513
||| |||||||| |||| || | | ||| ||| | || ||| |
Sbjct 1062738 TGGTGGTATTGGTCTCAATGCCCACCGAATCCGTG----CCACTGGCTCCTACATTGCTG 1062683
Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573
| || || ||| ||| | ||| || |||| ||||| || || || ||| ||| || |
Sbjct 1062682 GTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCC 1062623
Query 104574 GCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630
|||| || |||| | ||| ||| || || | || |||| |||||||| |
Sbjct 1062622 GCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCTT 1062563
Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690
||||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| |
Sbjct 1062562 GGCACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCC 1062503
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| |||||| || ||| || |||||||| || || || ||||||||| | ||||||
Sbjct 1062502 GCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAGA 1062443
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810
||| || | ||| | ||| | || || || || |||||||| |||| | |
Sbjct 1062442 AGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACG 1062383
Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870
|||| |||||||| ||||| ||| ||||||||| |||||| || | | || | |
Sbjct 1062382 GTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA--G 1062327
Query 104871 TGCCAGC--TGCC--GATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
| ||| | ||| || | | ||| | || || ||| || | || |||||||| || |
Sbjct 1062326 T-CCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGGAAA 1062268
Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985
|| | |||||||||||| || |||||||||| ||||| || || ||||| | ||
Sbjct 1062267 CCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGGCAC 1062208
Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
||| || || ||||| || || || ||| | || | | | |||||| ||
Sbjct 1062207 CATCCGAAGCTCTAATCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCGC 1062148
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGAC 105096
||| || ||||| || || | || || || ||| ||| ||| ||| |
Sbjct 1062147 TGTTTGCAACCTTGCCTCCCTTGCCCTGCCTGCTTTCATCAACTAT---GAT---GAGGC 1062094
Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156
| ||||| | || || || | || | | ||| | ||| | ||
Sbjct 1062093 ---TTGCTATGATTTCAAGAAGCTGCATCAGGTCAGTCAGGTTGTTGTCCGCAACTTGAA 1062037
Query 105157 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216
|| | || ||| || ||||| || | ||||| || || ||| | ||
Sbjct 1062036 CAAGATCATCGATGTCAACCACTACCCTGTGCAAGAGGCTCGCAACAGCAACATGCGTCA 1061977
Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACG 105275
||| || || ||||| ||||| |||||||| || |||| ||| || || || |||
Sbjct 1061976 CCGACCTATCGGTCTTGGTGTACAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CGCATGC 1061918
Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
| || || || || || | || |||| || || ||||||||||| || ||||
Sbjct 1061917 CCTTCGAGTCTCCAGAGGCTAGAGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACG 1061858
Query 105336 CCGCTCTTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393
| || || || || | ||||||| ||| || ||||| || ||||| |
Sbjct 1061857 CTGCCCTCACTGCCTCCGTGC--AGTTGGCCAAGGAGGAGGGTCCCTACTCTACCTTCAA 1061800
Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-C 105452
||||||||| || || | || | || || || || |||| |||| || |||| |
Sbjct 1061799 GGGTTCTCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGT-GGAACGT-----CAAGCC 1061746
Query 105453 TTC--AC---TACGACTGGGA-AGCTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGT 105505
||| || | |||||||| ||| || || | | | | ||| | ||| | |||
Sbjct 1061745 TTCCGACCTTTGGGACTGGGAGAGCCTTCGAGAGGATG--TTAAGACTCACGGTATCCGT 1061688
Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565
|||||||| ||| | || || ||||| || ||| ||| | || || ||||||| ||
Sbjct 1061687 AACAGTCTGCTCCTTGCCCCTATGCCTACTGCCAGTACCTCGCAGATTCTGGGTAACAAC 1061628
Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625
|| ||||| || || ||||| | ||||| || | | | || ||| || || |||||
Sbjct 1061627 GAGTGCTTCGAGCCTTACACCTCCAACATTTACCAGCGCCGAGTCCTTGCTGGTGAGTTC 1061568
Query 105626 GTGATTGTCAAC 105637
| ||||||||
Sbjct 1061567 CAGGTTGTCAAC 1061556
>seq19
Length=533231
Score = 107 bits (118), Expect = 2e-18
Identities = 158/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 94794
|||| || || | |||||| || || ||||| || ||| | | |||| | | | |
Sbjct 112158 TTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTC-T 112216
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||||| | || || | || || || || ||||||||||||||| ||| ||
Sbjct 112217 ACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCC 112276
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|| | | || | |||||||||||||| || |||||||| ||| | ||||||||||
Sbjct 112277 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAAC 112336
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| ||||||||||| ||||| || ||| || |||||
Sbjct 112337 GAGCTCATCTCTCGTGATGAGGGCCTTCACACCGACTTTGC 112377
>seq15
Length=801649
Score = 107 bits (118), Expect = 2e-18
Identities = 207/295 (70%), Gaps = 14/295 (5%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 9758
|||||||| || ||||||||||| || | || ||| | || ||| || | | ||
Sbjct 331050 GGCATCAAGTTCGTCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCG-GC-AGT--AA 331105
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
|||| || || || |||||||| || |||||||| || ||||| |||| || | || |
Sbjct 331106 AGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCG 331164
Query 9819 AACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877
|||| | || ||| || ||| || |||||| |||| ||||| ||||| || ||||||
Sbjct 331165 GACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTA 331224
Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTC-CAA 9935
|| ||||| || ||| | |||||| |||| |||| ||||| || | || | |
Sbjct 331225 CCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACCGAGGTCGCTA 331284
Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990
| | | ||||| | ||| ||||| || || | ||| | | ||| || |||||
Sbjct 331285 A--ACTTTTCAGGGTTCTTCAGAAACTCGACGACTTCCTGGAGTTCCTCCTTGGC 331337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260194866920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |