Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq66 246 4e-60 seq19 107 2e-18 seq15 107 2e-18 >seq66 Length=1847925 Score = 246 bits (272), Expect = 4e-60 Identities = 942/1452 (65%), Gaps = 69/1452 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG--AAGACATTGATTCTG 104279 || ||| ||||| ||||||| ||| | || ||||| |||||| | || ||||| || Sbjct 1062974 CCTCAGCACATGATCATGCGTGTGTCTATTGGTAT--ATGGGGCGATGATATTGAGCGTG 1062917 Query 104280 TCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCT 104337 |||||||||||||| || |||||| |||| | | ||| || || | || ||||| Sbjct 1062916 TCTTGGAGACATACAACCTCATGTCCAGCAAGTTCT--TCACCCATGCTTCCCCCACCCT 1062859 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||| |||||||| || |||||| | || |||||| | | | | ||||| Sbjct 1062858 CTTCAACGCTGGTACCCCTCAACCCCAGCTTTCTTCATGCTTCTTGGTTGATATGAAGGA 1062799 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||| || |||||||||||| || || | | ||||| || || ||| ||| Sbjct 1062798 GGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGC 1062739 Query 104458 TGGGGGTATTGGG----ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 ||| |||||||| |||| || | | ||| ||| | || ||| | Sbjct 1062738 TGGTGGTATTGGTCTCAATGCCCACCGAATCCGTG----CCACTGGCTCCTACATTGCTG 1062683 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || ||| ||| | ||| || |||| ||||| || || || ||| ||| || | Sbjct 1062682 GTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCC 1062623 Query 104574 GCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || |||| | ||| ||| || || | || |||| |||||||| | Sbjct 1062622 GCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCTT 1062563 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| | Sbjct 1062562 GGCACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCC 1062503 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | |||||| || ||| || |||||||| || || || ||||||||| | |||||| Sbjct 1062502 GCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAGA 1062443 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| || | ||| | ||| | || || || || |||||||| |||| | | Sbjct 1062442 AGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACG 1062383 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 |||| |||||||| ||||| ||| ||||||||| |||||| || | | || | | Sbjct 1062382 GTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA--G 1062327 Query 104871 TGCCAGC--TGCC--GATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | ||| | ||| || | | ||| | || || ||| || | || |||||||| || | Sbjct 1062326 T-CCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGGAAA 1062268 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||||||||| || |||||||||| ||||| || || ||||| | || Sbjct 1062267 CCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGGCAC 1062208 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || || ||||| || || || ||| | || | | | |||||| || Sbjct 1062207 CATCCGAAGCTCTAATCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCGC 1062148 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGAC 105096 ||| || ||||| || || | || || || ||| ||| ||| ||| | Sbjct 1062147 TGTTTGCAACCTTGCCTCCCTTGCCCTGCCTGCTTTCATCAACTAT---GAT---GAGGC 1062094 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 | ||||| | || || || | || | | ||| | ||| | || Sbjct 1062093 ---TTGCTATGATTTCAAGAAGCTGCATCAGGTCAGTCAGGTTGTTGTCCGCAACTTGAA 1062037 Query 105157 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216 || | || ||| || ||||| || | ||||| || || ||| | || Sbjct 1062036 CAAGATCATCGATGTCAACCACTACCCTGTGCAAGAGGCTCGCAACAGCAACATGCGTCA 1061977 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACG 105275 ||| || || ||||| ||||| |||||||| || |||| ||| || || || ||| Sbjct 1061976 CCGACCTATCGGTCTTGGTGTACAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CGCATGC 1061918 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 | || || || || || | || |||| || || ||||||||||| || |||| Sbjct 1061917 CCTTCGAGTCTCCAGAGGCTAGAGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACG 1061858 Query 105336 CCGCTCTTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 | || || || || | ||||||| ||| || ||||| || ||||| | Sbjct 1061857 CTGCCCTCACTGCCTCCGTGC--AGTTGGCCAAGGAGGAGGGTCCCTACTCTACCTTCAA 1061800 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-C 105452 ||||||||| || || | || | || || || || |||| |||| || |||| | Sbjct 1061799 GGGTTCTCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGT-GGAACGT-----CAAGCC 1061746 Query 105453 TTC--AC---TACGACTGGGA-AGCTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGT 105505 ||| || | |||||||| ||| || || | | | | ||| | ||| | ||| Sbjct 1061745 TTCCGACCTTTGGGACTGGGAGAGCCTTCGAGAGGATG--TTAAGACTCACGGTATCCGT 1061688 Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| ||| | || || ||||| || ||| ||| | || || ||||||| || Sbjct 1061687 AACAGTCTGCTCCTTGCCCCTATGCCTACTGCCAGTACCTCGCAGATTCTGGGTAACAAC 1061628 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 || ||||| || || ||||| | ||||| || | | | || ||| || || ||||| Sbjct 1061627 GAGTGCTTCGAGCCTTACACCTCCAACATTTACCAGCGCCGAGTCCTTGCTGGTGAGTTC 1061568 Query 105626 GTGATTGTCAAC 105637 | |||||||| Sbjct 1061567 CAGGTTGTCAAC 1061556 >seq19 Length=533231 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 94794 |||| || || | |||||| || || ||||| || ||| | | |||| | | | | Sbjct 112158 TTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTC-T 112216 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||||| | || || | || || || || ||||||||||||||| ||| || Sbjct 112217 ACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCC 112276 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| || |||||||| ||| | |||||||||| Sbjct 112277 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAAC 112336 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||||||||| ||||| || ||| || ||||| Sbjct 112337 GAGCTCATCTCTCGTGATGAGGGCCTTCACACCGACTTTGC 112377 >seq15 Length=801649 Score = 107 bits (118), Expect = 2e-18 Identities = 207/295 (70%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 9758 |||||||| || ||||||||||| || | || ||| | || ||| || | | || Sbjct 331050 GGCATCAAGTTCGTCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCG-GC-AGT--AA 331105 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 |||| || || || |||||||| || |||||||| || ||||| |||| || | || | Sbjct 331106 AGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCG 331164 Query 9819 AACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 |||| | || ||| || ||| || |||||| |||| ||||| ||||| || |||||| Sbjct 331165 GACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTA 331224 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTC-CAA 9935 || ||||| || ||| | |||||| |||| |||| ||||| || | || | | Sbjct 331225 CCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACCGAGGTCGCTA 331284 Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | | | ||||| | ||| ||||| || || | ||| | | ||| || ||||| Sbjct 331285 A--ACTTTTCAGGGTTCTTCAGAAACTCGACGACTTCCTGGAGTTCCTCCTTGGC 331337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260194866920