Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 136 1e-26 seq12 131 5e-25 seq2 114 4e-20 >seq3 Length=1379917 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||||| || ||||| || || || Sbjct 686897 CATACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTC 686956 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || || ||||| || ||||| ||||| || || || || || || Sbjct 686957 AGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGG 687016 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||| || || | ||||||| | Sbjct 687017 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCAGATGACT 687075 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | ||| | || |||||||| || || || || || || ||||| Sbjct 687076 CGACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 129 bits (142), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | || |||||||| ||||| |||||||| || || || || || Sbjct 686666 TTACTGACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTA 686725 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 686726 GTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 686785 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATG 140682 ||| || || || || || || ||||| || ||| || || || ||||| | || || Sbjct 686786 AGGGGGGATACCCTCCTTGTCTTGAATCTT-GCTCTTCACGTTGTCAATAGTGTCGCTTG 686844 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | |||||||| || || || || || ||||||||||| Sbjct 686845 ATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 Score = 127 bits (140), Expect = 6e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || || || || || || || | Sbjct 687121 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGT 687180 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| ||||| ||||| || || ||||||||||| || || ||||| | Sbjct 687181 AGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 687240 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || ||||| || || | || || || || || | ||| || | Sbjct 687241 CAGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGG 687300 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 687301 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 687343 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 687407 CATACCACCACGGAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 687466 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || ||||| || || | || ||||| ||||| Sbjct 687467 AGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGG 687526 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | || || | || Sbjct 687527 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTC 687586 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| | || || || || || ||||| Sbjct 687587 AACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 687637 >seq12 Length=2665234 Score = 131 bits (144), Expect = 5e-25 Identities = 437/675 (65%), Gaps = 15/675 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| | || || || |||| ||| | || ||||| Sbjct 1147908 GATATCATCGCCAACGACCAGGGTAACCGCACTACCCCCTCATTCGTCGGTTTCACCGAC 1147967 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | ||||| ||| | || || || || | || || || | || || Sbjct 1147968 ACCGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 1148027 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 1148028 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 1148081 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || | || Sbjct 1148082 GCCGATATGAAGCACTTCCCCTTCACCATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 1148138 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || | || ||||| || || || | ||| | Sbjct 1148139 GAGGTTGAGTTCAAGGGTGAGAAGAAGAACTTCACTCCCGAGGAGATCTCTGCCATGATC 1148198 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | |||||| Sbjct 1148199 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCTGTT 1148258 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || |||||||| | Sbjct 1148259 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTC 1148318 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 1148319 ATCGCCGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 1148378 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | ||| || || | || || || ||| | ||||||||| Sbjct 1148379 GGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGT 1148438 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 1148439 ACCTTCGATGTTTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 1148498 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| || || || ||||| Sbjct 1148499 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAGCCACTTCGTTAAC 1148558 Query 349916 GAATTTAAGCGTCAA 349930 ||||| || ||| || Sbjct 1148559 GAATTCAAACGTAAA 1148573 Score = 107 bits (118), Expect = 6e-18 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | |||||||| || ||||||||||| Sbjct 872380 CGCGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTATTC 872436 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || || | ||| ||||||||||| Sbjct 872437 AGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 872496 Query 377578 CCAGGATTGACAATAGCC 377595 ||||| || || | |||| Sbjct 872497 CCAGGGTTCACGAAAGCC 872514 Score = 102 bits (112), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||| ||||| |||| ||| || || || Sbjct 873141 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATGTAACCTGTTTCGGCAGTCTTGACCGC 873200 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || |||| ||||| Sbjct 873201 AGTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTAGGGGTAAG 873260 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| || | || |||||| || || | || | || || | ||||| || || Sbjct 873261 ACCACGAAGGTAAGAGTTCTCAACGAAACCACGAGCTTCGGGTGAGTAATCATCCTTGGT 873320 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||| | || || | || || || | ||||| ||||| || |||||| | || Sbjct 873321 GAAATGAGGCAGGGTGCGGTACTTGAAACCGAAAGGAATACGTTTGCCTTCAACAATTTG 873380 Query 378441 TTGACC 378446 ||||| Sbjct 873381 CTGACC 873386 >seq2 Length=1436644 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 785422 CATACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 785481 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 785482 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 785541 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || ||||| | || || | || Sbjct 785542 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 785601 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 785602 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252788621649