Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq66 268 1e-66 seq44 179 4e-40 >seq66 Length=1847925 Score = 268 bits (296), Expect = 1e-66 Identities = 499/727 (69%), Gaps = 18/727 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||||||| ||||| ||| || | ||| | |||| ||| || || || | || || Sbjct 1062921 GCGTGTCTTGGAGACATACAACCTCATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCAC 1062862 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| ||| || ||| | || |||||| |||| | ||||| Sbjct 1062861 CCTCTTCAACGCTGGTACCCCTCAACCCCAGCTTTCTTCATGCTTCTTGGTTGATATGAA 1062802 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || ||||| ||||| || || |||||| |||||| || |||||| Sbjct 1062801 GGAGGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGAT 1062742 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| ||| || | ||| | | || ||||||| | ||| | || Sbjct 1062741 GGCTGGTGGTATTGGTCTCAA-TGCCC-ACCGAATCCGTGCCACTGGCTCCTACATTGCT 1062684 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| || | || | || |||||||| || |||||||||||||| ||| Sbjct 1062683 GGTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCC 1062624 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| | ||||||||| ||||| || | || || |||||||| ||||| Sbjct 1062623 CGCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCT 1062564 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || | | ||||| || || || || ||| || ||| | || ||| | Sbjct 1062563 TGGCACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 1062504 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||| |||||||| || || ||||| || ||||| |||||| | || ||| Sbjct 1062503 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAG 1062444 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTA 53769 ||| ||| |||||| ||| |||||||| ||||||||||| || | | | | || ||| Sbjct 1062443 AAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTG-CTA 1062385 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAA 53823 |||||| |||||| | | | || || |||| | || | |||| ||| Sbjct 1062384 CGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGGGTCGC----- 1062330 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 ||| ||||||| | || | ||| |||| |||||| || |||| ||||| || Sbjct 1062329 -AAGTCCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1062271 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| ||||||||| | ||| |||||||||||||||||| |||| Sbjct 1062270 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1062211 Query 53944 CGTCATC 53950 | |||| Sbjct 1062210 CACCATC 1062204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC---ATGA 55784 |||||| ||||| ||| || ||||||||| | ||| | | | ||| | ||| Sbjct 1061443 TCAAGGCTCTTTACAAGACTGTTTGGGAGATTTCTCAGC---GCCAGGTTGTCCAGATGG 1061387 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||| || || ||||| | |||||| ||||||||||| || ||||| |||| || ||| Sbjct 1061386 CTGCCGACCGAGGTGCTTTCATCGATCAGTCCCAGTCCCTCAACATTCACATGAAGGATC 1061327 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | ||| |||| | | | |||||||| ||| |||||| || |||||||| | Sbjct 1061326 CCACGATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACTG 1061267 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||| || || || Sbjct 1061266 GCATGTACTACCTTCGCAC 1061248 >seq44 Length=1921322 Score = 179 bits (198), Expect = 4e-40 Identities = 228/310 (74%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||||||||| ||||||||||||| || |||||||| |||||| ||||| || Sbjct 223315 GGTGATAGGCGAGTAAAAATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGA 223256 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | |||||| ||||||||| ||| | |||||| | || |||||||| ||| Sbjct 223255 GAACCGAAGTTTCCACTGGGCTCCAAGCAGTTGATGTTGTTTGAACCGACAAAGTTCTGA 223196 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 || | | | ||| || || || ||||||||| ||||| |||||||| || || Sbjct 223195 GCAAGGCCTATAATGGTCTGCTGAAGAGACGCCTCACCGTGGTGGTACGCCGTTTGTTCG 223136 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530 | ||| || || | || | | | |||||| | || |||| || ||||| |||| || Sbjct 223135 GACACATAACCAGACAATTCAACAACCTTCTTATCCTTGACCA-AGTTTCTT-TTGAAGC 223078 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 | ||||| || ||||||||||||| ||||| | ||||||| ||| ||||| || | Sbjct 223077 AAGCATAGATAACCTTGCGCTGACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATC 223018 Query 117591 GCTTGATGTC 117600 | || |||| Sbjct 223017 TCATGTTGTC 223008 Score = 100 bits (110), Expect = 3e-16 Identities = 300/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || ||||||||||| |||| ||| |||| || ||||| |||| | Sbjct 223456 CCTGTACCGATACCATCGGCACCGTTGACGAGAACCATGGGCAGGATTGGGGCATAAACC 223397 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992 ||| || | || | || || || || | | || || ||| ||| || Sbjct 223396 ATCGGTTCAATCTTCTTGCCATCTTCGTA---GTGATGGATAA--GATTTGGCTCATCCA 223342 Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTG--AAGATGTATCGGGAGCT 152048 || | ||| ||| || | || ||| | | | ||| | || ||||| || | || Sbjct 223341 TGGGGTGGAAGATCTTGCGGG-CAAAGGG-TGATAGGCGAGTAAAAATGTAACGAGGACT 223284 Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| |||||| || || || | || || | |||| |||||| | | ||| Sbjct 223283 GGCAGCATCAGAGCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGCTCCAAGCAGTT 223224 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | || || || |||||||| | | ||| || ||| ||| ||| Sbjct 223223 GATGTTGTTTGAACCGACAAAGTTCTGAGCAAGGCCTATAATGGTCTGCTGAAGAGACGC 223164 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||||| |||||||| || || | | || || | ||| | | |||||| | Sbjct 223163 CTCACCGTGGTGGTACGCCGTTTGTTCGGACACATAACCAGACAATTCAACAACCTTCTT 223104 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| | || ||| | |||| || || || || ||||||||||| || || || Sbjct 223103 ATCCTTGACCAAGTTTCTTTTGAAGCAAGCATAGATAACCTTGCGCTGACCAGGCTTGAA 223044 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||| |||| ||| || || || | | || |||| Sbjct 223043 ACCATCCAAAACGGACGGGATGGATCTCATGTTGTC 223008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 18/192 (9%) Strand=Plus/Minus Query 119008 CATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACCAT---CACTAATTTTG----- 119059 |||||||| |||||| | ||| |||| | |||| |||| |||| ||| | Sbjct 221477 CATGTTGTTGGTCCAGGTCTGCTTGTA---CCTCTTGCCATGCTCACTGTTTTGGCACTC 221421 Query 119060 -ATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCAC- 119117 | || |||| | |||||| |||||| |||||||||||||| ||||| ||||||| Sbjct 221420 GAGATTGAATTCAGTACTGAAGACGTTGCACAGCTTGGCACCGTAACCGTTACGACCACC 221361 Query 119118 --CGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 ||||| || ||| ||||||| | ||||||| | | ||| | || || ||||| Sbjct 221360 AACGGTC---TTCTTCTCGTCGTCGTCGAAGTTGGAACCCGCCAACAAATGTCCGAAGAT 221304 Query 119176 GAGCTCGGGGAT 119187 ||||| ||||| Sbjct 221303 AAGCTCAGGGAT 221292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215432263400