Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq66 336 2e-87 seq3 194 2e-44 seq2 176 5e-39 seq44 170 2e-37 seq82 129 7e-25 >seq66 Length=1847925 Score = 336 bits (372), Expect = 2e-87 Identities = 945/1428 (66%), Gaps = 56/1428 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || ||| || ||| | || | ||| | ||||||||||| || |||| Sbjct 1061569 AACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCG 1061628 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | || || || || ||||| ||| | | | ||| || Sbjct 1061629 TTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGACTGTTA 1061688 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAAC---CCCAACG 80532 || | ||||| |||| | |||||| || || || || | ||| | || | Sbjct 1061689 CGGATACCGTGAGTCTTAACATCCTCTCG-AAGGCTCTCCCAGTCCCAAAGGTCGGAAGG 1061747 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| |||||||||| ||| | ||| ||||| || || ||||| ||| ||| | Sbjct 1061748 CT-TGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAACCCTTGAAGG 1061806 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAA 80649 | ||| || |||||| |||||||| || |||| || | ||||| ||||| || Sbjct 1061807 TAGAGTAGGGACCCTCCTCCTTGGCCAACTG-CACGGAGGCAGTGAGGGCAGCGTGGTAG 1061865 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | | | |||| ||| ||||| | || || | Sbjct 1061866 ATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACTCGAAGGGCATGCGC 1061925 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | | ||| | ||||| || ||||| || || | |||| || ||||| ||| || Sbjct 1061926 AGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATAGGTCGGTGACGCATG 1061985 Query 80770 TTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || | | || ||||| | | ||||| ||| |||||||| ||||| ||| Sbjct 1061986 TT-GCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATGATCTTGTTCAAGTT 1062044 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC-CTTCA 80887 ||| ||||||| | | || | ||| || |||| || || || | || | ||| Sbjct 1062045 GCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATC--ATAGCAAGCCTCATCA 1062102 Query 80888 CA-------AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG-- 80938 | || || || ||| ||||| || || ||||| || || ||||| |||| Sbjct 1062103 TAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGG 1062162 Query 80939 -CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGT 80995 || | ||| ||||| ||| || ||||||| |||||| ||| || || || |||| Sbjct 1062163 GCA-CAGTA--CTCGATGATCTCAGTGCACAGATTAGAG--CTTCGGATGGTGCCGAGGT 1062217 Query 80996 TTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCT 81055 | |||||||| |||| ||| || || |||||||| |||| | ||| | ||||||| Sbjct 1062218 TCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCT 1062277 Query 81056 CGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATT 81115 || ||| | || ||||||||| | ||||| || | ||||||| |||||| | Sbjct 1062278 CGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCCT 1062337 Query 81116 TGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTG 81174 | ||||| | | ||||| |||| | || |||| |||||| | ||| | | Sbjct 1062338 TACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGT-CGGCA 1062396 Query 81175 AGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC 81234 || | ||||||||||| |||||||| ||| ||| || || ||||| ||| |||| Sbjct 1062397 AGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTC 1062456 Query 81235 ATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCA 81294 |||||| |||||||||||||||||| ||||||||||||| ||| ||||||| | | Sbjct 1062457 ATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTA 1062516 Query 81295 CCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATAC 81354 || ||||| || | || || || || | || || || ||||| ||||| || || Sbjct 1062517 CCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCAAGGTAG 1062576 Query 81355 ACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCG 81408 | || | | || | |||| | |||||||| | ||||| |||||||| | Sbjct 1062577 ATAGCAAAAGCACCAGGTCGCTTGTTA---CCACCCTGATCAACGTAGCGGGCAGTGTTG 1062633 Query 81409 TTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGC 81468 || || ||||| | |||||| | | ||| | || |||||| ||||| | || Sbjct 1062634 TTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAG 1062693 Query 81469 GACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || || |||| || | | || |||| ||||| || ||||| | | ||| |||| Sbjct 1062694 GAGCCAGTGGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAA 1062751 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 || ||||| || | ||| ||||| || || || ||||| || | ||||| |||| Sbjct 1062752 TCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAA 1062811 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGG 81641 |||||| || || | ||| || ||||| || || ||||| || || || Sbjct 1062812 CCAAGAAGCATGAAGAAAGCTGGGG-----TTGAGGGGTACCAGCGTTGAAGAGGGTGGG 1062866 Query 81642 GGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAAT 81701 || || || |||| | | | ||||| |||| || || ||| ||| || ||| Sbjct 1062867 GGAAGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATGTCTCCAAGACACGCTCAAT 1062926 Query 81702 ATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| || || ||||| |||| |||||||| | ||||| ||| || Sbjct 1062927 ATCATCGCCCCATATACCAATAGACACACGCATGATCATGTGCTGAGG 1062974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 1061242 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 1061301 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | || |||| ||||| || ||||| |||||| Sbjct 1061302 ATGCTGGTGATCTTGCCCATCGTGGGATCCTTCATGTGAATGTTGAGGGACTGGGACTGA 1061361 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||||||| || || || || ||||| Sbjct 1061362 TCGATGAAAGCACCTCGGTCGGCAGCCAT 1061390 >seq3 Length=1379917 Score = 194 bits (214), Expect = 2e-44 Identities = 172/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 687343 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCGAC 687284 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||||||||||||||||||||| ||||||||||| || || Sbjct 687283 AACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCCTGATC 687224 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| || ||||| || |||| |||||| Sbjct 687223 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAA 687164 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||| | || ||||| ||||| Sbjct 687163 TCCACACTTCATCTCGTCCTCCGCCTTCGTGGTGG 687129 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 687640 ATCATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 687581 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || ||||| ||| Sbjct 687580 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 687521 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| ||||| ||||| || ||||||| || ||||| | || || Sbjct 687520 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTAC 687461 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || ||||| ||| | || || || ||||| Sbjct 687460 AACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGCCTCCGTGGTGG 687411 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| || || || || | || || |||||| | Sbjct 687127 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 687068 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || |||||||||||||| |||||||| ||||| Sbjct 687067 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAA 687008 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||| | || ||||| | ||||| || Sbjct 687007 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 686948 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || | ||||| || ||||| Sbjct 686947 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 686901 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| || |||||||| || ||| | Sbjct 686899 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 686840 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| || ||||| ||||||||||| || || || |||||| Sbjct 686839 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCCCCTGACCAG 686780 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| || ||||| | ||| || | ||| ||||| || Sbjct 686779 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGC-GACTACAA 686721 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || || | || ||||| || || || Sbjct 686720 CATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGTCA 686670 >seq2 Length=1436644 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 785655 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 785596 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| ||||| || ||| Sbjct 785595 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 785536 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 785535 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 785477 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||||| || || ||| | || || || ||||| Sbjct 785476 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGTGGTGG 785426 >seq44 Length=1921322 Score = 170 bits (188), Expect = 2e-37 Identities = 223/305 (73%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT--G 32040 ||| || |||||||| ||||||||||| || || || ||| |||| ||||| || | Sbjct 223037 GGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAA-AAGAAACTTGG 223095 Query 32041 TCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCAC 32100 || || || | |||||| | | |||| || || ||| | || |||||||| || ||| Sbjct 223096 TCAAG-GATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAACGGCGTACCAC 223154 Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 ||||| |||||||| || ||| |||||| | |||||||||||||||||||||| || Sbjct 223155 CACGGTGAGGCGTCTCTTCAGCAGACCATTATAGGCCTTGCTCAGAACTTTGTCGGTTCA 223214 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || ||| | |||| | ||||| |||| | || || | || || ||||||||| Sbjct 223215 AACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACTTGCCGGTGGCTCT 223274 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 |||||||| || | |||||||| || || || || |||| | | |||||||| ||| Sbjct 223275 GATGCTGCCAGTCCTCGTTACATTTTTACTCGCCTATCACCCTTTGCCCGCAAGATCTTC 223334 Query 32281 GACCC 32285 |||| Sbjct 223335 CACCC 223339 >seq82 Length=1669964 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 1275063 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1275122 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 1275123 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 1275182 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 1275183 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1275242 Query 27595 G 27595 | Sbjct 1275243 G 1275243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309808302960