Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10]
83 sequences; 41,590,745 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 1e-30
seq82 143 6e-29
seq3 143 6e-29
seq66 107 5e-18
>seq2
Length=1436644
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||||||||| || || |||| ||||| ||| || || | |||||
Sbjct 785441 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 785500
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||||||||| || ||||| || ||||| || ||||||||
Sbjct 785501 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 785560
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || |||||||| || | ||||| || | |||||||||
Sbjct 785561 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 785620
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| | || || | ||| | |||||
Sbjct 785621 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652
>seq82
Length=1669964
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||||| ||||| || |||||||| |||||||||||
Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063
>seq3
Length=1379917
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| ||||| || || || || | ||||| || | | |||| || ||
Sbjct 686916 AGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCC 686975
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 686976 TCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 687035
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||||||||| || | || || || || ||||| ||
Sbjct 687036 TGGATCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTT 687095
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 687096 TTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| || |||||||| || || || || || |||| ||||| ||| ||||||
Sbjct 686678 ACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGT 686737
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| |||||||||||||| || || ||||| || || |||||
Sbjct 686738 GCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATACC 686797
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| |||||| || || ||||| | ||| || || |
Sbjct 686798 CTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAG 686857
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| || | ||| | |||||
Sbjct 686858 GGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899
>seq66
Length=1847925
Score = 107 bits (118), Expect = 5e-18
Identities = 184/266 (69%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCG---ACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACC 193556
||||||||| |||| || |||| || || ||||| | |||||||| | || |
Sbjct 1062220 TTCTGGTTGCTCTTGCGGTTACAG---GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTC 1062276
Query 193557 TCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCC 193616
|| | || || |||| ||| || |||||| | || || || | | | | | ||
Sbjct 1062277 TCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCC 1062336
Query 193617 TTTCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCG 193676
|| ||||||||||||||||| ||||| || ||||||| |||| |||||| ||| |
Sbjct 1062337 TTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCA 1062396
Query 193677 AGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTC 193736
||||| || || || ||||| | ||| |||| ||||| | | || || | ||||
Sbjct 1062397 AGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTC 1062456
Query 193737 ATGAAGAGGTCAGATGTCCAAATGGC 193762
||||| ||||||| |||| | |||
Sbjct 1062457 ATGAAAAGGTCAGGGATCCAGAGGGC 1062482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192529931817602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |