Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19 102 1e-16 >seq19 Length=533231 Score = 102 bits (112), Expect = 1e-16 Identities = 352/545 (65%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 ||||| || ||||| | | || | ||||| || || || | ||||||||| || ||| Sbjct 112365 TGAAGGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCA 112306 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || |||||||| || || | || || | || ||||| || || || ||||| Sbjct 112305 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCA 112246 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCC 48332 || || || || | | | | | | || |||| | ||||| || ||| Sbjct 112245 GCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGGATCCATCGAATGGCC 112186 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttt 48392 || ||||||||||| | || || || || || | ||| || ||||| || || Sbjct 112185 CAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTCGC 112126 Query 48393 t---CATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| | || | ||| || || || | || ||| | |||||||||||| Sbjct 112125 TGGGCAG-GCT--CCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAATA 112069 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || || || || || |||||||| || |||| || || | |||||| ||||| Sbjct 112068 TTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCG 112009 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | ||||| ||| | | ||||| || || || |||||| |||||| || || || | Sbjct 112008 CTGAATCGCTCAACTAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAGGCAAGG 111949 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCT 48626 | || || || | | |||| | |||| | || ||||| || | || ||| Sbjct 111948 ATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGGAGATCC 111889 Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || || | ||| | || || || ||||| || || ||||| || || || ||||| | | Sbjct 111888 TTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGC 111829 Query 48687 CATAT 48691 || || Sbjct 111828 CAGAT 111824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668079281120