Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 120 7e-22 seq2 116 9e-21 seq82 89.7 1e-12 seq66 89.7 1e-12 >seq3 Length=1379917 Score = 120 bits (132), Expect = 7e-22 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| ||||| |||||||| || ||||||||||| ||| ||||| | Sbjct 686682 AGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGA 686741 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || || ||||||||||| | ||||||||| | | ||| || ||| Sbjct 686742 CCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCC 686801 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGA 152063 || |||||||| || || || | || | |||| ||| || || ||||| Sbjct 686802 TTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGA---TTCGACCTCAAGG 686858 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||| ||||| | |||||| Sbjct 686859 GTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| || || || || ||||||||||| ||||| | |||| ||||| Sbjct 687143 GAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATC 687202 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | | ||||| ||||| || Sbjct 687203 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTC 687262 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | | || || ||| || |||||||| || || Sbjct 687263 CTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGT 687322 Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||| ||||| |||| Sbjct 687323 CTTGCCAGTGAGGGTCTTGACGA 687345 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || || ||||| || |||||||||||||| | | || | Sbjct 687419 GAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCG 687478 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || | | ||||||||| | | ||| || || Sbjct 687479 GCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTC 687538 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | |||| ||| ||| || || || || Sbjct 687539 CTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGT 687598 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| ||||||| ||||| Sbjct 687599 GATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 687637 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | |||| || || |||| Sbjct 686921 CAAG-TGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCTA 686979 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||||||||| | ||| ||||| | | || || ||||| || || | Sbjct 686980 GTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGA 687039 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | |||| || ||| ||||| | || || ||||| | Sbjct 687040 TCTTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTTC 687099 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 687100 CGGTAAGGGTCTTGACGAAGATTTGCAT 687127 >seq2 Length=1436644 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| ||| | || | Sbjct 785434 GAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 785493 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || |||||||| | ||||||||||| | || || || Sbjct 785494 GCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTC 785553 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 785554 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGT 785613 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||| | |||||| Sbjct 785614 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652 >seq82 Length=1669964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||||| ||||| || || || || |||||||| Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||| ||||| Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063 >seq66 Length=1847925 Score = 89.7 bits (98), Expect = 1e-12 Identities = 185/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 115635 GCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTC 115694 ||| | |||| |||| ||||| |||||||| || || |||||| ||||| |||| Sbjct 1062482 GCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAGAAGAACGGAGAGTGGACCCTC 1062423 Query 115695 TTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTT 115754 | || ||||| || ||||||||||| || || ||| |||||||||| || Sbjct 1062422 ATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAAGAGTTTGAGGCCCTC 1062363 Query 115755 TACGAAAGGTACGAGAAAG-AGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTG 115813 ||||| | |||||||| | ||| ||| | | || | | ||||| || | ||||| Sbjct 1062362 TACGAGAAGTACGAGAGGGAAGGTAAGGGTCGCAA-GTCCATCAAGGCCCAGAAGCTTTG 1062304 Query 115814 GCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAAGATGC 115873 | || ||||| | | ||| | ||| ||||| ||||| || ||||| ||||| Sbjct 1062303 GTATGCCATCCTCGAGGCCCAGACCGAGACCGGAAACCCCTTCATGCTTTACAAGGATGC 1062244 Query 115874 AGTTTGTCGAAAGAGCAATCAAAAGAATTTCGG 115906 | || |||||||| || ||||| |||| Sbjct 1062243 CTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1062211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819572983693