Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 172 1e-37 seq2 168 1e-36 seq82 147 5e-30 seq19 89.7 1e-12 seq10 84.2 5e-11 >seq3 Length=1379917 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || ||||||||||| |||| Sbjct 687410 ACCACCACGGAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 687469 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || ||||| || || |||||| || Sbjct 687470 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 687529 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||||||||| |||| || || Sbjct 687530 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAAC 687589 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 687590 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 687637 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| ||| || |||||||||||||| || Sbjct 687128 ACCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGC 687187 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||||| || || |||||| || Sbjct 687188 GAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 687247 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| || || || | ||||| Sbjct 687248 AATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGAC 687307 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || |||||||| ||||| || || | ||||| |||| Sbjct 687308 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 687345 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | || || || || ||||||||||||| Sbjct 686900 ACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGA 686959 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||||||||| || || || ||||| | || |||||||| || Sbjct 686960 AAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCGGGAGG 687019 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| |||||| ||||| || || | ||||| ||||| || | |||| Sbjct 687020 AATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTCGATGGTGTCAGATGACTCGA 687078 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| || || || || | ||||| ||||| || ||||| Sbjct 687079 CTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 687127 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | || || || |||||||||||||| Sbjct 686672 ACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 686731 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || ||||| || || || || || ||||| | ||| || |||||| || Sbjct 686732 CAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 686791 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||||| ||| ||||| || ||| | || |||||||| | ||||| Sbjct 686792 GATACCCTCCTTGTCTTGAATC-TTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGA 686850 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 686851 CCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 686899 >seq2 Length=1436644 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 785425 ACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 785484 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 785485 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 785544 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 785545 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 785604 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 785605 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 785652 >seq82 Length=1669964 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || |||||| Sbjct 1275241 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1275182 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 1275181 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1275122 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 1275121 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 1275063 >seq19 Length=533231 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 ||||||||| | | || ||| ||| || || || || || ||||| ||| | |||| Sbjct 112499 GGCATGAATTCCAACCTGATGAAGCAGTACATTGAGTTTGTCGCTGACCGTCTACTCGTC 112558 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || ||||||| || || || ||| |||||||||| || |||||| ||| Sbjct 112559 GCTCTCGGCAACGAGAAGGTTTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATC 112618 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408 || || || || || ||||||||||| ||||||||| || || || | | | ||| Sbjct 112619 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGT 112678 Query 230409 GT 230410 || Sbjct 112679 GT 112680 >seq10 Length=882988 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042 ||| ||||| ||||| || | | || || | ||||| | | ||||| || || | Sbjct 578903 GTCAAGGTCGTGCTCGACGAAGACGGTCTTGACCTCATCCTGCTTGGGGAAACCCTCAAC 578844 Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102 ||| |||| || || | ||| || || ||||| || | ||| ||||| |||||||| Sbjct 578843 CTGTTCGTTGTTGATGGCGCGCATAAGAGTGGACTTTCCGGAACCGTTGGGACCGCAAAG 578784 Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 ||| || || | || ||| || | | |||| | ||| ||||||||||| |||| Sbjct 578783 ACCGTAACGCTGACCACGCTTGAGGCGGAGATGGGTCTGGTTGAGAAGAATCTTGGCACC 578724 Query 317163 ATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 ||| || |||||||| ||| | || || ||||| || Sbjct 578723 ATAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACC 578685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738086858282