Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769215.1_202014-10-10] 83 sequences; 41,590,745 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq82 140 8e-28 seq3 138 3e-27 seq66 91.5 4e-13 >seq2 Length=1436644 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 785649 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 785590 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 785589 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 785530 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 785529 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 785470 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 785469 CAGAAGGAGTCCACTCTCCACCTGGT 785444 >seq82 Length=1669964 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||||||||| || ||| |||||||| Sbjct 1275062 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1275121 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 1275122 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 1275181 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| || Sbjct 1275182 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1275241 >seq3 Length=1379917 Score = 138 bits (152), Expect = 3e-27 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || |||||||| || |||||||| ||||| || |||||||| ||||| ||| ||| Sbjct 686896 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAA---TCAAGC 686840 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || ||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 686839 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCCCCTGACCAG 686780 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || ||||||||||| || || ||||| || || || | ||| | ||| || ||| Sbjct 686779 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAC 686720 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || || || |||||| | |||| Sbjct 686719 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACT 686682 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 687634 CAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 687575 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 687574 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 687515 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || || ||||| || ||||| | || || | ||||| ||| || Sbjct 687514 CGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAACATC 687455 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 687454 CAGAAGGAGTCCACCCTCCATCTCGT 687429 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || |||||||| ||||| | || || || || ||| Sbjct 687124 CAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCTGAC 687065 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| ||||| || Sbjct 687064 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAG 687005 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || || || || || ||| | || ||| | || || ||| | Sbjct 687004 CGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAACATT 686945 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || ||||| ||||| |||| || Sbjct 686944 CAGAAGGAGTCAACTCTGCA-CTTGGTT 686918 >seq66 Length=1847925 Score = 91.5 bits (100), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| | |||||| ||||| ||||| || |||| Sbjct 1062216 GTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGT 1062275 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247 |||| || || | || ||| || ||| || | |||||||| | | ||| | | Sbjct 1062276 CTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGC-GAC 1062334 Query 214248 TCTTCCCT-CGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306 ||| ||| | | |||||||| || || || | |||||| || ||||||| || Sbjct 1062335 CCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGG 1062394 Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366 ||||||| || |||||||||||| | || |||| | ||| || | | || | | Sbjct 1062395 CAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCT 1062454 Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390 ||||||||||||| | |||||| Sbjct 1062455 TCATGAAAAGGTCAGGGATCCAGA 1062478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729919907102