Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq73 174 2e-38 seq33 127 2e-24 >seq73 Length=2503951 Score = 174 bits (192), Expect = 2e-38 Identities = 633/981 (65%), Gaps = 26/981 (3%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| || || || || ||||| || ||||||| || | || | || |||||| Sbjct 1796370 GCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCA 1796429 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| |||||| | |||||| || | || | || || ||||| |||||| Sbjct 1796430 GTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 1796489 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||| ||||| ||||| || | || || || |||||| || | || || | | Sbjct 1796490 GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATAC 1796549 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGTG 53939 || | | ||||| || || ||| | ||| ||| || ||||| | | Sbjct 1796550 CAAAGCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCG 1796606 Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 || | | |||||||| || || | | | | | ||||| || || | || | Sbjct 1796607 TAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 1796664 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 |||| | | ||||||||||| | || || || ||||| || || ||||| ||||| | Sbjct 1796665 ACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGA 1796724 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 | || | || || || | || | ||||| || || |||||| ||||| | Sbjct 1796725 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 1796784 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 ||||| | | | ||||| ||||| || || | ||| || | | | | ||||| || | Sbjct 1796785 GGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCT 1796844 Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 |||| || |||||||| | ||| | || ||||| || | || | | ||| |||| || Sbjct 1796845 TGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAA 1796904 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 54297 ||| ||||||| ||| ||||| || | || ||| ||| ||||||| || | Sbjct 1796905 CACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGG 1796964 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 |||| ||||| || || || ||||| || || || | || || || | ||||| Sbjct 1796965 CATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATC 1797022 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 |||||| || || || || || ||| |||| | || | || || || | ||| | Sbjct 1797023 ATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGG 1797082 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || || || || || || | ||| || ||||| || || || | || || | Sbjct 1797083 TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACAT 1797142 Query 54478 TAGATTGTACGTCTC---GATA-GCTGAGTCT-AT-ATCCCATTGATGAATTCCTACTGC 54531 || ||||| ||||| || | ||| | | | || | ||||| || || | | Sbjct 1797143 AAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAGA 1797196 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 |||||||| | |||||||||||| | ||| || |||||| || || || || | ||| Sbjct 1797197 CACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTA 1797256 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| ||||| || || || ||||| || | |||| || || || ||||| | ||| Sbjct 1797257 TGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAAT 1797316 Query 54652 AACTGAGTTGAGTTTATCCTT 54672 | |||| || | ||||| Sbjct 1797317 GGCGGAGTCTAGCTCTTCCTT 1797337 >seq33 Length=5643559 Score = 127 bits (140), Expect = 2e-24 Identities = 373/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| || |||||||| | | || | |||||||| || || | Sbjct 146634 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 146575 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 146574 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 146515 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || || ||||||| || | || || | | | | |||| || Sbjct 146514 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 146455 Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | || ||||| || ||||||||| | || || || || || | ||| || Sbjct 146454 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 146396 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| ||| || | | || || | || || ||||| | || ||| | Sbjct 146395 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 146336 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || ||||| || || || ||||| ||||||||||| |||| |||||| | || Sbjct 146335 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 146276 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | ||||| || | | || || || || || || ||| || || Sbjct 146275 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 146216 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 24607 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 146215 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 146156 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 146155 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 146096 Query 24668 TTTATACATATTCCAGA--TGTCATGATAT 24695 || ||||| | ||||| ||| | ||||| Sbjct 146095 CTTGTACATTTGCCAGATCTGTGACGATAT 146066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721021121440