Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq44 127 2e-24 seq2 125 6e-24 seq12 109 5e-19 >seq44 Length=1303881 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 485424 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 485483 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 485484 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 485543 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | ||| | ||| || Sbjct 485544 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 485603 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 485604 CCCGTGAGGGTCTTGACGAAAATCTGCATG 485633 >seq2 Length=4137638 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || ||||| ||||||| |||||| ||||| ||||| || ||| Sbjct 2556173 GTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCA 2556114 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || || |||||||||||| ||| || || Sbjct 2556113 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTTC 2556054 Query 118662 ACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | || | |||||||| | ||| | || || || || ||||| Sbjct 2556053 ACGTTGTCAATAGTGTCGCTTGAT-TCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 2555995 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 2555994 CTTGACGAAAATCTGCAT 2555977 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || ||||||||||| | ||||| |||||| ||||| Sbjct 2555441 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGC 2555382 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| | || | |||||||| || ||||| |||||||||||||| ||| || Sbjct 2555381 TTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 2555322 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||||| | ||| ||||||| ||| | || ||||||||| Sbjct 2555321 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 2555262 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 | || || || || || |||||| Sbjct 2555261 AAGGTCTTGACGAAGATTTGCATG 2555238 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| || | || || ||||| Sbjct 2555957 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCT 2555898 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| |||| || ||||| || || ||||| || ||||||||||| Sbjct 2555897 AGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGG 2555838 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | |||||| || | || | ||||| Sbjct 2555837 ATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTT 2555778 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 2555777 CCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 >seq12 Length=4746347 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||| || |||||||||||| || |||||| |||| Sbjct 3789981 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3789922 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 3789921 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3789862 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 3789861 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 3789802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829987589976