Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq44 111 1e-19 seq2 102 6e-17 seq12 86.0 5e-12 >seq44 Length=1303881 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| |||| ||| | || || Sbjct 485424 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 485483 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | |||||||||||| Sbjct 485484 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 485543 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 485544 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 485603 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || |||||| ||||| Sbjct 485604 CCCGTGAGGGTCTTGACGAAAATCTGCATGATGCCT 485639 >seq2 Length=4137638 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||||||||||||||| || || |||| || Sbjct 2555957 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCT 2555898 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||||||||| ||||| | ||||||||||||| Sbjct 2555897 AGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGG 2555838 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| || |||| || || || || Sbjct 2555837 ATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTT 2555778 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 2555777 CCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||| || || ||| | || || || || Sbjct 2555441 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGC 2555382 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||| ||||| ||||| ||||| | |||||||||||| ||| || Sbjct 2555381 TTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 2555322 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| | ||| ||||| | ||| || |||||||| ||| Sbjct 2555321 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 2555262 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTG 45340 | ||||| || |||||||||||| || Sbjct 2555261 AAGGTCTTGACGAAGATTTGCATGATG 2555235 >seq12 Length=4746347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||| |||||||||||| || | ||| ||| ||| || || || || |||| Sbjct 3789983 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCG---AGCTGCTTACCAGCGA 3789927 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | |||| ||||||||||| || || | |||||||||||| || || ||| || Sbjct 3789926 AGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 3789867 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | ||||| ||| ||||| | ||| || |||||||||||||| ||||| | Sbjct 3789866 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGA 3789807 Query 45324 CAAA 45327 | || Sbjct 3789806 CGAA 3789803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074824431638