Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq73 300 1e-76 seq2 109 5e-19 seq44 100 3e-16 >seq73 Length=2503951 Score = 300 bits (332), Expect = 1e-76 Identities = 642/954 (67%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || |||||| | || || || || Sbjct 1796376 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1796435 Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 ||||| | | || || ||||| | || |||||||||| || || || || | | Sbjct 1796436 AGATT---AGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCA 1796492 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || |||||| ||| | ||||| ||| || ||| Sbjct 1796493 TCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAA 1796552 Query 23204 ATAGTCTGAGCGTGAAC--ACGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 | |||| || | | || | || | | ||||| || ||| ||||||| | ||| Sbjct 1796553 AGCTTCTGGGCCTTGATGGACTTGCGACCCTTACCTTCCCTCT----CGTACTTCTCGTA 1796608 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| || || || | | | || ||||| Sbjct 1796609 GAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 1796668 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||||| | || || ||||| || |||| ||||| || || ||||| || || Sbjct 1796669 GAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGC 1796728 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| ||||||||||| |||||||| || ||| ||||||| | ||| | || Sbjct 1796729 CAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 1796788 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | ||||| || || |||| ||| || Sbjct 1796789 CTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTT 1796848 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 || |||||||| ||||| ||||| ||||||||| | || | |||||| || || | ||| Sbjct 1796849 ACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACC 1796908 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| | ||| || || | || || | || || | ||| | | Sbjct 1796909 GTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATT 1796968 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || || || || ||||| || || || || || || ||||| Sbjct 1796969 GAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGAT 1797028 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || || ||||||||||| || | | |||||||| || || || | || | || || Sbjct 1797029 ACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGG 1797088 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| || || || ||| | | ||||| || || Sbjct 1797089 GGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTT 1797148 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || | | | ||||| || || || |||||| || | || ||||| || Sbjct 1797149 GTATGTCTCCAAGACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGAT 1797208 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| ||||| | ||||| | ||||| ||| |||| || ||||| || | || Sbjct 1797209 CATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAA 1797268 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| || || ||||| || | || | || ||||| |||| || ||||| || Sbjct 1797269 CGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCGGA 1797322 Score = 104 bits (114), Expect = 2e-17 Identities = 304/466 (65%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | ||||| | | |||||||| || |||||||| Sbjct 1795454 CTGGTCGACAGTGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCC 1795513 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||| | |||||| || || || || || | || || | || Sbjct 1795514 AGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG 1795573 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||||||||| || || ||||| ||||| || Sbjct 1795574 ATCCTTCATGTGAATGTTGAGGGACTGGGACTGATCGATGAAAGCACCTCGGTCGGCAGC 1795633 Query 22285 CATATTTATCAATGTA-CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | ||| | ||| || || ||||| || |||||||| || | ||| | Sbjct 1795634 CATCTGGA-CAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGCCTTGACGT 1795692 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||| | || ||||||| | || || || || | Sbjct 1795693 CGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAATACGGTTCTTCA 1795752 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| |||||| || ||| || | ||| |||| || |||| || || | Sbjct 1795753 TGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTGACAACCT 1795812 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | ||||| || | | ||| ||||| |||||||||||||| ||| | || ||||| | | Sbjct 1795813 GGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACT 1795872 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 | ||||| ||||| ||||| | ||| || || ||||| || || Sbjct 1795873 CGTTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGC 1795918 >seq2 Length=4137638 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 2555238 CATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 2555297 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 2555298 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 2555357 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | || || || | ||||| || Sbjct 2555358 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAA 2555417 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || ||| | || | || |||| Sbjct 2555418 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGGTA 2555467 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || |||||| | || || ||| | | Sbjct 2555977 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 2556036 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||||| || | || || |||||| Sbjct 2556037 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 2556096 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | ||| ||||||| || || Sbjct 2556097 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAT 2556156 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||||| || || || |||| | |||||| Sbjct 2556157 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGT 2556204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| ||||| | || || || | || Sbjct 2555749 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 2555808 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || || ||||| Sbjct 2555809 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 2555868 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| || | || ||| || | || || ||| Sbjct 2555869 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 2555928 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || |||| ||| | ||| | || |||| Sbjct 2555929 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGGTA 2555977 >seq44 Length=1303881 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 485633 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 485574 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 485573 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 485514 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 485513 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 485454 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 485453 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 485421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765965377760