Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq73 156 5e-33 seq33 118 1e-21 >seq73 Length=2503951 Score = 156 bits (172), Expect = 5e-33 Identities = 457/698 (65%), Gaps = 16/698 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||||||||||| | || || || ||||| || Sbjct 1796648 AGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAA 1796707 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || ||||| ||||| || || | || || || | | | ||||| || || Sbjct 1796708 AAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTG 1796767 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 1796768 GTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGC 1796827 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || |||||||| | ||| | || ||||| || | || Sbjct 1796828 AAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGAC 1796887 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| || |||||| ||| |||| |||||||| | || ||| ||| | Sbjct 1796888 ACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGT 1796947 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | |||| ||||| || || || ||||| || || || | || Sbjct 1796948 GGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCA 1797005 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || |||||||| || || ||||| || || |||| | || | || Sbjct 1797006 CAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAG 1797065 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | ||| | ||| || || || || || | ||| || ||||| || || Sbjct 1797066 CATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTG 1797125 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATA---GCTGAGTCT-AT-ATCCCAT 63752 || | || || | || ||||| |||| ||| | ||| | | | || | ||||| Sbjct 1797126 AAGAACTTGCTGGACATAAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT 1797185 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 || || | | |||||||| | |||||||||||| | ||| ||||| ||| | Sbjct 1797186 ------ATACCAATAGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCG 1797239 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | || || | | ||| ||| ||||| || || || ||||| || | |||| || Sbjct 1797240 TCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAA 1797299 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || ||||| | ||| | || | |||| ||||| Sbjct 1797300 TCACGGTCGTAGACAATGGCGGAGTCTAGCTCTTCCTT 1797337 >seq33 Length=5643559 Score = 118 bits (130), Expect = 1e-21 Identities = 371/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| || |||||||| | | || | ||||| || || || | Sbjct 146634 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 146575 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| || || | ||| |||||| Sbjct 146574 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 146515 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | | || | | | | |||| || Sbjct 146514 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 146455 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 146454 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 146396 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 146395 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 146336 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 146335 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 146276 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| || | | || || || || || |||||| || || Sbjct 146275 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 146216 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 146215 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 146156 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 146155 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 146096 Query 34115 TTTATACATATTCCAGA--TGTCATGATAT 34142 || ||||| | ||||| ||| | ||||| Sbjct 146095 CTTGTACATTTGCCAGATCTGTGACGATAT 146066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816985927840