Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq73 176 6e-39 seq33 118 2e-21 >seq73 Length=2503951 Score = 176 bits (194), Expect = 6e-39 Identities = 633/976 (65%), Gaps = 28/976 (3%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || || ||||| || ||||||| || | || | || || |||||||| Sbjct 1796376 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1796435 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || ||| | ||||| || | || | || || ||||| |||||| |||||| Sbjct 1796436 AGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCC 1796495 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || ||||| ||||| || | || || || |||| | || | || || | ||| | | Sbjct 1796496 TTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAA-G 1796554 Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTA-TTGT-GTATAT 79854 || | ||||| || |||||| | ||| ||| || ||||| || | ||| | Sbjct 1796555 CTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAG 1796611 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | || ||||| || || | ||| | | ||||| || |||| || ||||| Sbjct 1796612 GGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATG 1796669 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||||||||| | | || || || ||||| || || ||||| ||||| || || Sbjct 1796670 AGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCC 1796729 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 | || || || | || | |||||| || || |||||| ||||| |||||| Sbjct 1796730 AGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAAC 1796789 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||||| ||||| || || | ||| || || | | | || ||||| ||||| Sbjct 1796790 TCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTA 1796849 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | ||| | || ||||| || | || | | ||| |||| || ||| Sbjct 1796850 CCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCG 1796909 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212 ||||||||||| ||||| || | || ||| ||| ||||||| || | |||| Sbjct 1796910 TTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTG 1796969 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 ||||| || || || ||||| || || || | || || || | |||||||||| Sbjct 1796970 --AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGA 1797027 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || ||||| || || |||| | || | || || || | ||| | || Sbjct 1797028 TACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAG 1797087 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || || || || | ||| || ||||| || || || | || |||| || | Sbjct 1797088 GGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGT 1797147 Query 80393 TGTACGTCT-CAATA---GCTGATTCT-AT-ATCCCATTGATGAATTCCTACCGCGACAC 80446 |||| |||| ||| | ||| | | | || | ||||| || || | | |||| Sbjct 1797148 TGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAGACACAC 1797201 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 |||| | |||||||||||| | ||| || |||||| | || || | | ||| ||| Sbjct 1797202 GCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATC 1797261 Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 80566 ||||| || || || ||||| || | |||| || || || ||||| | ||| | | Sbjct 1797262 GCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCGG 1797321 Query 80567 AGTTGAGTTTATCCTT 80582 ||| || | ||||| Sbjct 1797322 AGTCTAGCTCTTCCTT 1797337 >seq33 Length=5643559 Score = 118 bits (130), Expect = 2e-21 Identities = 371/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| || |||||||| | | || || |||||||| || || | Sbjct 146634 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 146575 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || ||||| || ||||| ||||| | || |||||| Sbjct 146574 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 146515 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGT 50136 || || || || || || |||||||| || | | || | | | | |||| || Sbjct 146514 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 146455 Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 146454 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 146396 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 146395 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 146336 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 146335 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 146276 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | ||||| ||| | | || || || || || || ||| || || Sbjct 146275 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 146216 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCA 50432 || || || | | || || || | |||| | || | | || ||||| Sbjct 146215 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 146156 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 146155 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 146096 Query 50493 TTTATACATATTCCAGA--TGTCATGATAT 50520 || ||||| | ||||| ||| | ||||| Sbjct 146095 CTTGTACATTTGCCAGATCTGTGACGATAT 146066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268099687920