Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq44 116 3e-21 seq33 111 1e-19 >seq2 Length=4137638 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || ||||||||||| Sbjct 2555465 CCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 2555406 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || || ||||||||||| |||||| Sbjct 2555405 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2555346 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||| |||| ||||| | Sbjct 2555345 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 2555286 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| | || || ||||| || ||||||| Sbjct 2555285 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGA 2555237 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || |||||||| ||||||||||| || Sbjct 2555975 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 2555916 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||||||| |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 2555915 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 2555856 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 2555855 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACT 2555796 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| || || || ||||| || ||||| Sbjct 2555795 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || || ||||| ||||||| ||||| |||||| |||||||| || Sbjct 2556174 GGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACC 2556115 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | |||||||||||| || || || || || ||||| || || ||| Sbjct 2556114 AGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTT 2556055 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | ||| ||| | || |||| || | ||| | || || || || ||||| Sbjct 2556054 CACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 2555995 Query 131217 TTTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 2555994 CTTGACGAAAATCTGCAT 2555977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || || ||||| || |||||||| ||| Sbjct 2555747 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCG 2555688 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| || |||| | ||||| ||||| ||||| Sbjct 2555687 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 2555628 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||||||| |||||||| Sbjct 2555627 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACC 2555568 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | || | ||| || || || || || || |||| Sbjct 2555567 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 2555531 >seq44 Length=1303881 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||||||| |||||| ||||| |||||||| || Sbjct 485436 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 485495 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||||||||||| || || || || ||||| ||| || |||| Sbjct 485496 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 485555 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | || | ||| | || || || || || || Sbjct 485556 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 485615 Query 131218 TTTACGAAAATCTGCATGA 131236 || |||||||||||||||| Sbjct 485616 TTGACGAAAATCTGCATGA 485634 >seq33 Length=5643559 Score = 111 bits (122), Expect = 1e-19 Identities = 336/510 (66%), Gaps = 13/510 (3%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | |||||||| || |||||| | || | | Sbjct 146411 ATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTCT 146470 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| | ||| |||| ||||| || ||| ||||| |||| || || Sbjct 146471 ACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCC 146530 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||||| ||||||| | |||| | ||| |||||||||| |||| || |||| Sbjct 146531 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAAC 146590 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACA- 46321 ||||| || || || ||||||||||| || || |||||||| || | ||| | | || Sbjct 146591 GAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTTGCCTGCCTTCTTCACTCCCAT 146650 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 ||| | || | ||| || | | | | | ||| | || || || Sbjct 146651 CTCAAGGGCCGTGCTAGCAAGC-----AGATGATCCAGGACATCATTTGTGATGCCGTCA 146705 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 |||||||| ||||||| | || | || || ||| ||||||||| ||||||||| | Sbjct 146706 CCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTGCTTGGCATGAACTCCA 146765 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAG 46500 | ||| | ||||| |||||||| || ||||| || ||||| ||| || || Sbjct 146766 ACCTGATGAAGCAGTACATTGAGTTTGTCGCTGACCGTCTACTCGT--CGCTCTCGGCAA 146823 Query 46501 C-CGAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | |||| ||| || | | | || || || || || ||| | ||||||||||| | | Sbjct 146824 CGAGAAG-GTTTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTG 146882 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCG 46588 |||| || || || ||||| ||||| |||| Sbjct 146883 GCAAGACCAACTTCTTCGAGAAGCGTGTCG 146912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012339787520