Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq73 178 2e-39 seq33 127 3e-24 >seq73 Length=2503951 Score = 178 bits (196), Expect = 2e-39 Identities = 636/982 (65%), Gaps = 28/982 (3%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| || || || || ||||| || ||||||| || | || | || |||||| Sbjct 1796370 GCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCA 1796429 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| |||||| | |||||| || | || | || || ||||| |||||| Sbjct 1796430 GTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 1796489 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 |||||||| ||||| ||||| || | || || || |||| | || | || || | | Sbjct 1796490 GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATAC 1796549 Query 62927 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGT 62980 || | | || | ||||| || || ||| | ||| ||| || ||||| | Sbjct 1796550 CAAA-GCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTC 1796605 Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||| | | || ||||| || || | | | | || ||||| || || | || Sbjct 1796606 GTAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGG 1796663 Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100 ||||| | | ||||||||||| | || || || ||||| || || ||||| ||||| Sbjct 1796664 CACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAG 1796723 Query 63101 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63160 || || | || || || | || | ||||| || || |||||| ||||| Sbjct 1796724 AGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCA 1796783 Query 63161 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63220 |||||| | | | ||||| ||||| || || | ||| || || | | | ||||| || Sbjct 1796784 AGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGC 1796843 Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||| || |||||||| | ||| | || ||||| || | || | | ||| |||| | Sbjct 1796844 TTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACA 1796903 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63338 | ||| ||||||||||| ||||| || | || ||| ||| ||||||| || | Sbjct 1796904 ACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGG 1796963 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 |||| ||||| || || || ||||| || || || | || || || | |||| Sbjct 1796964 GCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTAT 1797021 Query 63399 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63458 ||||||| || || || || || ||| |||| | || | || || || | ||| Sbjct 1797022 CATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGG 1797081 Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 | || || || || || || | ||| || ||||| || || || | || || | Sbjct 1797082 GTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACA 1797141 Query 63519 GTAGATTGTACGTCT-CAATA---GCTGAGTCT-AT-ATCCCATTGATGAATTCCTACTG 63572 || ||||| |||| ||| | ||| | | | || | ||||| || || | | Sbjct 1797142 TAAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAG 1797195 Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632 |||||||| | |||||||||||| | ||| || |||||| || || || | | || Sbjct 1797196 ACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGT 1797255 Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692 | ||| ||||| || || || ||||| || | |||| || || || ||||| | || Sbjct 1797256 ATGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAA 1797315 Query 63693 TAACCGAGTTGAGTTTATCCTT 63714 | | |||| || | ||||| Sbjct 1797316 TGGCGGAGTCTAGCTCTTCCTT 1797337 >seq33 Length=5643559 Score = 127 bits (140), Expect = 3e-24 Identities = 373/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| || |||||||| | | || | |||||||| || || | Sbjct 146634 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 146575 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 146574 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 146515 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 32837 || || || || || || ||||||| || | | || | | | | |||| || Sbjct 146514 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 146455 Query 32838 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | || ||||| || ||||||||| | || || || || || | ||| || Sbjct 146454 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 146396 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| ||| || | | || || | || || ||||| | || ||| | Sbjct 146395 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 146336 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || ||||| || || || ||||| |||||||||||||||| |||||| | || Sbjct 146335 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 146276 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| || || | ||||| || | | || || || || || || ||| || || Sbjct 146275 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 146216 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33133 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 146215 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 146156 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 146155 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 146096 Query 33194 TTTATACATATTCCAGA--TGTCATGATAT 33221 || ||||| | ||||| ||| | ||||| Sbjct 146095 CTTGTACATTTGCCAGATCTGTGACGATAT 146066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631382208800