Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq33 136 8e-27 seq2 113 9e-20 seq12 107 4e-18 seq1 93.3 9e-14 >seq33 Length=5643559 Score = 136 bits (150), Expect = 8e-27 Identities = 290/429 (68%), Gaps = 18/429 (4%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | || ||||| |||| Sbjct 146922 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCC 146863 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||||||||| ||||| ||| | ||| || || |||| | Sbjct 146862 ATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACGAGTAGA 146803 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| |||||| | ||||||||||||| || | Sbjct 146802 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCA 146743 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTG-- 251779 || || | |||||| || ||| |||| || ||| || || | ||||| || Sbjct 146742 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCAT----CACAAATGAT 146687 Query 251780 --CCT---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCG 251832 ||| ||| ||| ||| || || || || || | |||| || || | Sbjct 146686 GTCCTGGATCATCTGCTTGCTAG-CACGGC----CCTTGAGATGGGAGTGAAGAAGGCAG 146632 Query 251833 CCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCA 251892 |||| | ||| || |||||||| ||| ||||| ||||||||| | || || Sbjct 146631 GCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCG 146572 Query 251893 GGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGA 251952 ||||| | ||||| ||| ||||||||||||| | | ||||| || ||| | | | Sbjct 146571 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 146512 Query 251953 CCCTCGACA 251961 ||||||||| Sbjct 146511 CCCTCGACA 146503 >seq2 Length=4137638 Score = 113 bits (124), Expect = 9e-20 Identities = 433/671 (65%), Gaps = 13/671 (2%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || ||||| || ||||||||||| ||||||||||| || | || ||||| || | Sbjct 1451366 AGTTGGATCTCTTTCTGGTGGTTGGAAAATGAAGCTGGCTCTAGCCCGAGCCATGCTGCA 1451307 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||||||||| || || || || || || || ||||| | || ||||| | || Sbjct 1451306 GCGTGCCGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1451247 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCT--GAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||| || | ||||| | || | | || ||||| |||||| Sbjct 1451246 ATGGCTCGAGACCTATCT--CAAGTCTCACACCGATATCACCAGTCTTATTGTTTCTCAC 1451189 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||| || ||| | || ||| | ||| ||| ||||| |||| || |||| Sbjct 1451188 GACTCCGGATTCTTGGACAACGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAG 1451129 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || | ||| ||||||||| |||||||| | ||||||||||| Sbjct 1451128 CTGGCTTGTTACAAGGGCAACCTGAACGCTTTCGTTCAGATCCGCCCTGAGGCCAAGAGT 1451069 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| |||| | | |||| | ||| | |||||| || || || || Sbjct 1451068 TACTACACCCTGTCCGCCTCCACTGTTCAGTTCAAGTTCCCTCCTCCTGGTATTTTGACC 1451009 Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 || ||| || | ||| || || || | | ||| |||||| | || || | Sbjct 1451008 GGTGTCAAGTCTCAAACTCGTGCTATTATCCGCATGTCC--AACGTCTCATACGCCTACC 1450951 Query 280111 CCAATGGCCCCAA--CATCT-TC-AGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 | |||| || || | ||| || || || ||| || || | | | ||| || Sbjct 1450950 CTAATGCACCAAAGCCTTCTCTCGAGGAG-GTCTCCTGTCAACTGACCCTTTCCTCTCGT 1450892 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| ||||||| ||||| ||||| || ||||| || || ||||| | || |||||| Sbjct 1450891 GTTGCCATCATTGGCCCCAACGGTGCTGGCAAGTCGACACTTATCAAGCTGCTTACTGGC 1450832 Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||||| || || || ||| |||||| || ||| | || || | |||| | Sbjct 1450831 GAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCTAACCTCCGTATCGGTTACATT 1450772 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| | | || | |||| ||| |||| | || |||||||| ||| || Sbjct 1450771 AAGCAGCACGCCCTGGAGCATGTTGAGATGCACTTGGAGAAAACCCCTAACCAGTACCTT 1450712 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 1450711 CAGTGGCGTTA 1450701 >seq12 Length=4746347 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 1940470 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 1940411 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 1940410 CAGACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1940351 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 1940350 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 1940292 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 1940291 GGACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTCC 1940249 >seq1 Length=4664806 Score = 93.3 bits (102), Expect = 9e-14 Identities = 200/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGA---GCGTTCTAT 218573 ||||||||| |||| ||||| ||||| ||| ||||| || | ||| || || Sbjct 2933480 GACTTCATCAACAAAGAGCTTATTCTCTTCA----GTATGGCTGACAACATGCGATCCAT 2933535 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || ||| ||||||| ||||||| ||||| ||| | ||| ||| ||||| Sbjct 2933536 CCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAA 2933595 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | ||| |||| | || | ||||| | | | || ||||||||||| |||||| | Sbjct 2933596 AAGAAACTTGGTCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAAC 2933655 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| |||||||||||| ||| || |||| ||||| | || ||| ||| Sbjct 2933656 GGCGTACCACCACGGTGAGCAGTCTCTTCAACAGACCATCATAGGCCTTGCTCAGAACTT 2933715 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||| |||||||| |||| || |||| || | || |||||||| || Sbjct 2933716 TGTGGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACT 2933772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835772805598