Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 179 7e-40 seq44 170 4e-37 seq12 152 9e-32 seq33 136 7e-27 >seq2 Length=4137638 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || ||||| || || || Sbjct 2555975 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 2555916 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || |||| ||||| || ||||| || |||| |||||||| || ||| Sbjct 2555915 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 2555856 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | ||| || ||| Sbjct 2555855 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACT 2555796 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 2555795 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || |||||||| ||||| ||| Sbjct 2555465 CCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 2555406 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || || Sbjct 2555405 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGG 2555346 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 2555345 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 2555286 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || | |||||||||||| || ||||| ||| Sbjct 2555285 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGATG 2555235 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || ||||| || || |||||||| || |||| | Sbjct 2555747 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCG 2555688 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| ||| Sbjct 2555687 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 2555628 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| |||||||| || | || || || Sbjct 2555627 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACC 2555568 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || |||||||||||||||| Sbjct 2555567 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 2555531 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || ||||| || || ||| Sbjct 2556203 CCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGCTC 2556144 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 2556143 AAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGA 2556084 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||| ||| || || ||||| |||||| || Sbjct 2556083 ATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACC 2556024 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 2556023 TCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 2555977 >seq44 Length=1303881 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 485406 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 485465 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || ||| Sbjct 485466 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 485525 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 485526 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 485585 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || |||||||||||||||||||| |||||||| |||| Sbjct 485586 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 485637 >seq12 Length=4746347 Score = 152 bits (168), Expect = 9e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 3789981 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3789922 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 3789921 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3789862 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||||||||| Sbjct 3789861 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 3789803 Score = 125 bits (138), Expect = 1e-23 Identities = 441/676 (65%), Gaps = 37/676 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| ||||||| ||||| ||||||||| |||||| Sbjct 1939461 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGATGGTTATCAATATGGGCGAAAGCG 1939520 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 1939521 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 1939580 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| ||||| || |||| |||||| ||||| ||||| || || Sbjct 1939581 ATAAGCTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGATA 1939640 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG---G 225217 ||| |||| || || || | ||| | | || ||||| ||| || | Sbjct 1939641 ACGGCAATACGAGAGCCCAGAGAGCACTGGAAAGAGATGTCGCTGA---TCTGGGGCTTG 1939697 Query 225218 CCAGTTT---GGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGGTCC 225268 ||| |||| |||| || | |||| || ||| || | || Sbjct 1939698 GAAGTACCGGGGTACTGGAAGGACATGTTGGTGGCACGGAG------GATAGCCTTGGCC 1939751 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 1939752 TTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGTGAACTCCATCTCGGACTCA 1939811 Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 1939812 CCAAGCTCGTAGTAAGACTTGGCAGAG--GGGTTGCGG-GCGACGAAGGCAGCCAGGTTA 1939868 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || || | ||||||||| || |||||| ||||| || ||| | ||| || Sbjct 1939869 CCTCTGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAGACGTT 1939924 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGA 225503 ||| ||||| ||||||||||| || || |||||||| | || | || | ||||| Sbjct 1939925 GTCGAGGAAACCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG--CG--GAGTTCTTGA 1939980 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | || |||| ||||| ||||| ||||| |||| Sbjct 1939981 GGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAA 1940040 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 |||| || || | | | || || ||| || |||| ||||||||| ||||| || | Sbjct 1940041 GCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCAC 1940100 Query 225624 CGGACAGGGAGCCGAT 225639 | || |||| || ||| Sbjct 1940101 CAGAGAGGGCGCTGAT 1940116 >seq33 Length=5643559 Score = 136 bits (150), Expect = 7e-27 Identities = 563/868 (65%), Gaps = 35/868 (4%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || | || || |||||||||||||| |||||| | || Sbjct 146935 GACACCAGCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 146876 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC--GCCAAACTGCTTGGGGTAACCG 10055 ||| ||| |||||||||||| |||||||| ||| |||| ||| || ||| Sbjct 146875 GGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTAAAC--CTTCTCGTTGCCG 146818 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || || || | |||||||| || ||||| |||||||| ||||||||| |||||| Sbjct 146817 AGAGCGACGAGTAGACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 146758 Query 10116 ATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||||| || | ||||||| || || | ||| |||| || ||| ||| || Sbjct 146757 ATGCCAAGCAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 146698 Query 10176 TCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || | |||| || | || | | | || || || ||| | || | Sbjct 146697 TCACAAATGATGTCCTGGATCATCTGCTTGCTAGCACGGC----CCTTGAGATGGGAGTG 146642 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 || || |||| | ||| ||||||||||| || ||||| ||||||||| || Sbjct 146641 AAGAAGGCAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAA 146582 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 || |||||||||||| || || || |||||||| |||| | || | ||| Sbjct 146581 GGTCAAACCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 146522 Query 10352 GAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410 ||| | | |||||| || ||| | |||| || || || | || |||| ||| | Sbjct 146521 GAAGAAGATACCCTCGACAGCA-GCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTC-C 146464 Query 10411 GCGAAAAGTAT--TTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGTCTC 10465 | | || |||| |||||| | |||||||||| | |||||| || || || Sbjct 146463 TTGTCCTGGATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGA-TGCAGGGAATGGTATC 146405 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAG 10525 | ||| | |||||| | | | |||| || |||| || | |||| |||||| Sbjct 146404 AACAGCGTTGAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAG 146345 Query 10526 GGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTG 10584 ||| || |||| ||| | |||| | ||| | ||||||| ||| || | Sbjct 146344 GGAATAGGTCTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCAT-CGAG 146286 Query 10585 CC-GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCC 10642 || |||| || | ||| | | | || | | | | | |||||||| | || ||||| Sbjct 146285 CCTCAGGGATCTG-GACCT-CGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCC 146228 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 ||| | || |||||| | |||||||| ||||||| |||| ||| | ||| Sbjct 146227 ATCAGAAGCAGCGAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAG 146168 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || ||| || | ||||| | ||| | | |||||| | ||||||| Sbjct 146167 ACGGTTGTT----CCAATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGA 146112 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||| || |||||||||||||||| || Sbjct 146111 AAGAAGCCTCGGCCTTCTTGTACATTTG 146084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621501418160