Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq44 118 1e-21 seq33 116 4e-21 seq2 114 1e-20 seq12 100 3e-16 >seq44 Length=1303881 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 485436 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 485495 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 485496 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 485555 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 485556 ACGTTG-TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 485614 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 485615 CTTGACGAAAATCTGCATG 485633 >seq33 Length=5643559 Score = 116 bits (128), Expect = 4e-21 Identities = 349/532 (66%), Gaps = 15/532 (3%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| | | || | ||| |||||| | || | ||||| || |||||||| Sbjct 146390 CTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGA 146449 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || | || | || || | ||| ||||| || | || ||||| |||||| Sbjct 146450 TGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAG 146509 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 || |||||||| || |||||| | || || | | || | || | ||| Sbjct 146510 GGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATG 146569 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 ||||| | || || ||||||||| ||||| | ||||| ||||| |||||| ||||| Sbjct 146570 CCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTT 146629 Query 47286 GCCTGTCT-CT--ACTACAA-CACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTC 47339 ||||| || || ||| | | | | || | || | | ||| | || | | Sbjct 146630 GCCTGCCTTCTTCACTCCCATCTCAAGGGCCGTGCTAGCAAGCAGA---TGATC-----C 146681 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||||| || || |||||| |||||||| |||||| || | |||||||| ||| Sbjct 146682 AG-GACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCC 146740 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | | || |||||| | | |||||| ||||||| || |||||||| ||| Sbjct 146741 TGTGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTCGCTGAC 146800 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTT 47519 || || ||||| || | ||| ||||| | || || || ||||| || Sbjct 146801 CGTCTACTCGTCGCTCTCGGCAACGAGAAGGTTTACAAGGCCACAAACCCCTTCGACTTC 146860 Query 47520 ATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 ||| | ||||| || || | |||||||||||||| ||||||||||| |||| Sbjct 146861 ATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 146912 >seq2 Length=4137638 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || ||| Sbjct 2555435 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 2555376 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| ||||||||||||||| || || |||| Sbjct 2555375 GCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 2555316 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 2555315 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 2555256 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 2555255 TTGACGAAGATTTGCATG 2555238 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || ||||| ||||| || Sbjct 2555975 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 2555916 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || ||||| || || |||||| |||| | |||||| || || ||||| Sbjct 2555915 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 2555856 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||||| |||| |||| |||||| | |||||| Sbjct 2555855 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATGGTGTCAGATGACTCGAC 2555797 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| ||||| || || || || || || ||||| Sbjct 2555796 TTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| |||| || |||||| || || ||||| || ||| Sbjct 2556173 GTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCA 2556114 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || ||||||||||| || || ||| Sbjct 2556113 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTTC 2556054 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||| || | ||| | || || || || ||||| Sbjct 2556053 ACGTTG-TCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 2555995 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 2555994 CTTGACGAAAATCTGCAT 2555977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | | || || ||| || ||||| || ||| Sbjct 2555717 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 2555658 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||| || |||||||| || |||||||||||| ||| ||| |||| Sbjct 2555657 GCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 2555598 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | |||||| || | || | || ||||| || || || Sbjct 2555597 ACGTTG-TCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 2555539 Query 127096 TTTTAC 127101 || || Sbjct 2555538 CTTGAC 2555533 >seq12 Length=4746347 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 3789949 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 3789890 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 3789889 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 3789830 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 3789829 GGTCTTGCCCGTCAGGGTCTTGACGAAA 3789802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500336386720