Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq73 185 1e-41 seq33 152 6e-32 >seq73 Length=2503951 Score = 185 bits (204), Expect = 1e-41 Identities = 956/1505 (64%), Gaps = 45/1505 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || ||| || | | | || ||||||| ||||| ||| Sbjct 1795803 TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGC 1795862 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| ||||| |||| || || | || ||| || ||||| || || | | Sbjct 1795863 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGG 1795922 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC-CTTGAGGGCG-TCCCAGTCGT 116041 || || ||||| |||| ||| | ||| | | | || || ||| |||||||| Sbjct 1795923 AGCAGACTGTTACGGATACCGTTAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCCC 1795980 Query 116042 AGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 | | | || | | |||||| || |||||||||||||| | || || || | Sbjct 1795981 AAAGGTCGGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAG 1796040 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGA 116158 | |||| || || || || ||||| ||| ||||| | ||||| || || Sbjct 1796041 AACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG---GCAGTGA 1796097 Query 116159 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 116218 |||| ||||| || || |||||||| || | || | | | ||||| || | Sbjct 1796098 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1796157 Query 116219 CAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 | || | | || || | || || |||| || ||||| || ||||| || || || Sbjct 1796158 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1796216 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 116337 || || || | ||| || || ||||| | ||| || || || |||||| Sbjct 1796217 GGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATG 1796276 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 116397 | | | || | || | ||||||| ||| | ||| ||||| | | ||||| | Sbjct 1796277 ATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCATA- 1796335 Query 116398 CTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 || || ||| |||| ||| | ||| ||||| | || || || || || ||| Sbjct 1796336 --GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACA 1796393 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | | |||||| || |||||| || || || || |||| ||| || || ||| Sbjct 1796394 GCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGGATG 1796453 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | |||||| || || ||| |||||| ||||||||||| ||||| | || Sbjct 1796454 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGG 1796513 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 | || ||||| || |||| || ||| || || | ||| | | || | | || | | Sbjct 1796514 TTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG----AT 1796569 Query 116634 GGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690 || ||| | | || ||| ||||||||| |||||||||||||||||||||| | Sbjct 1796570 GGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCA-C 1796628 Query 116691 CACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCT 116749 | ||| || | || || || || | || || | ||| | ||| | || || Sbjct 1796629 CGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCT 1796688 Query 116750 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 116809 |||||| ||||||||||| ||||| ||||||||||| ||| ||| || || || || Sbjct 1796689 TCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGC 1796748 Query 116810 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 116869 | | || || | || || || || | || | || || | || ||| ||||||| Sbjct 1796749 GGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCC 1796808 Query 116870 ACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACAT 116923 | || || ||||| | || | | || | |||| |||| |||| | || | Sbjct 1796809 AAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTG---TTACCACCCTGATCAACGT 1796865 Query 116924 ACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 116983 | | || || ||| || || || ||||| |||| | ||| | ||| || || | Sbjct 1796866 AGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGG 1796925 Query 116984 TCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 117041 | || || || ||| | |||| | || |||| | | ||||||||| || Sbjct 1796926 TACCAGCAATGTAGGAGCC--AGTGGCACGGATTCGGTGGGCATTGAGACCAATACCACC 1796983 Query 117042 TGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 117101 ||| ||| || || || || | |||| | | ||||| || || || ||| Sbjct 1796984 AGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTC 1797043 Query 117102 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 117161 |||| | | | | |||||| || | || || || |||||||||||||| Sbjct 1797044 CTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAA 1797103 Query 117162 GAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAG 117219 |||||| || | || ||| ||| | | |||| |||||| | ||| ||||||||| Sbjct 1797104 GAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTGTATGTCTCCAAG 1797161 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| ||| || || || ||||| || || || ||||| | ||||| || || Sbjct 1797162 ACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAGGA 1797221 Query 117280 GTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCA 117339 ||| | | | || || | | | ||||||| |||||| ||||||| ||| Sbjct 1797222 CGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGCCA 1797281 Query 117340 AAATA 117344 || || Sbjct 1797282 AAGTA 1797286 >seq33 Length=5643559 Score = 152 bits (168), Expect = 6e-32 Identities = 531/815 (65%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 146920 GTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 146861 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | || ||| || | | || | | ||| ||| Sbjct 146860 GAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGAC--GAGTAGA 146803 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| |||| | |||||||| || | ||| | Sbjct 146802 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCA 146743 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| || || || |||| ||| ||||||| || || || | | |||| | Sbjct 146742 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCC 146683 Query 127469 TGAATAGTGTCCACCCCAG---GTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 || || | | | | || | | ||| | | | |||||| | ||||| Sbjct 146682 TGGATCATCTGCTTGCTAGCACGGCCCTTGAG-ATGGGAGTGAAGAAGGCAG--GCAAAG 146626 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || ||||||||||| |||||||| || || |||||| || ||| |||||| Sbjct 146625 TCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATG 146566 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || | ||| | || ||||||||| ||||| Sbjct 146565 AGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCG 146506 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTT 127704 ||| ||||| |||| ||||| | |||||||| | | | |||| | | ||| Sbjct 146505 ACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGG-TAGAGTCCTTGTCCTGGATCCATCG 146447 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || ||||| | ||||| || ||| || || | ||| | | || | ||||| | Sbjct 146446 AATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTA 146387 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 127824 | | | || || |||||||| | || ||||| ||||| || ||| ||| Sbjct 146386 GGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTG 146327 Query 127825 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 | | | ||| || | || | ||||||| | || || || ||||| |||| Sbjct 146326 AATATTCTCCATCAT-GATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCT 146268 Query 127884 CATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942 | | || ||| | | | || ||||| ||||| ||||| || |||| || || Sbjct 146267 C-GCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAG 146209 Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCG 127999 || ||||| | ||||| ||| || | | ||| || | ||||| |||| | Sbjct 146208 GCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGG 146149 Query 128000 AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||||||| |||||||| | |||||| |||||||| Sbjct 146148 AGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 146114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506601830480