Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq12 111 2e-19 seq44 107 2e-18 >seq2 Length=4137638 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || ||||| | || || ||||||||||| ||||| Sbjct 2555430 CTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 2555371 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| ||||| ||||| | Sbjct 2555370 AATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 2555311 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||||| ||||| |||| || || || Sbjct 2555310 GTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 2555251 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 2555250 GAAGATTTGCAT 2555239 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| || || |||||||| ||||| Sbjct 2555940 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAA 2555881 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | | |||||||||| ||||||| ||||| ||| Sbjct 2555880 GATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 2555822 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || |||| ||||||||||| || || || || || | Sbjct 2555821 TGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGA 2555762 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 2555761 CGAAGATTTGCAT 2555749 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||| | |||||| |||| || |||||||| || ||||| Sbjct 2556168 CTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 2556109 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||||| |||| | ||| Sbjct 2556108 GATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTTCA-CGT 2556050 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||| ||||| || || | ||||| || || || || || || || | Sbjct 2556049 TGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGA 2555990 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 2555989 CGAAAATCTGCAT 2555977 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||| ||||| |||||||||| || || || | || || Sbjct 2555729 ACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCA 2555670 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||| ||||||| || | | |||||||||| | Sbjct 2555669 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGG 2555610 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | || ||| || || || || | |||||||| || Sbjct 2555609 ATCTTCGACTTGA-CGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTT 2555551 Query 46564 GCCCGTCAGCGTTTTAAC 46581 ||| || || || || || Sbjct 2555550 GCCAGTGAGGGTCTTGAC 2555533 >seq12 Length=4746347 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| ||||| || | || ||||||||||| || ||||| | Sbjct 3789983 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 3789924 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | || |||||||||| |||||| ||||| | Sbjct 3789923 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 3789864 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 3789863 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 3789804 Query 46584 A 46584 | Sbjct 3789803 A 3789803 >seq44 Length=1303881 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || ||||||||||| || || || Sbjct 485441 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 485500 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 485501 GATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 485559 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 485560 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 485619 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 485620 CGAAAATCTGCAT 485632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237848892560