Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq33 206 3e-48 seq2 122 9e-23 seq44 116 4e-21 seq12 114 1e-20 >seq33 Length=5643559 Score = 206 bits (228), Expect = 3e-48 Identities = 555/834 (67%), Gaps = 35/834 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || |||||||| Sbjct 146904 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTT 146845 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||||| || ||||||| || | ||| || || ||| Sbjct 146844 GTGGCCTTGTAAACCTTCTCGTTGCCGAG-AG--CGACGAGTAGACGGTCAGCGACAAAC 146788 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGACGCACCGGC-AGCGCT 132798 || ||||| ||| ||| |||| | | || | || ||||| |||| || || || Sbjct 146787 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCAAGCAGG-GCACAGGGGAGAGCC 146731 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 || ||||| || ||||| |||| ||| || || | ||| ||| | | | Sbjct 146730 TCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCCTGGATCATCTGC 146671 Query 132859 GCGCT----CGGCCGTTGCACCAAATGCT--TGAACATCAAGCAAGCAAAGTCGCAATGC 132912 ||| ||||| ||| | ||| |||| | | ||| ||||||||| || Sbjct 146670 TTGCTAGCACGGCCCTTG----AGATGGGAGTGAAGA--AGGCAGGCAAAGTCGGTGTGA 146617 Query 132913 AAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGT 132972 | ||||||||| | || ||||| |||||| ||| ||||| |||||||||||||| || Sbjct 146616 AGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGC 146557 Query 132973 TTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCG 133032 || |||||||| || |||| ||| || || ||||||| |||||||| || ||| Sbjct 146556 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCG 146497 Query 133033 AAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCC 133090 || || ||||| || | | | || || | || ||| ||| |||||| || | |||| Sbjct 146496 AAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTG--GATCCATCGAATGGCCC 146439 Query 133091 ATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCT 133150 | || ||||| | | || ||| || || || || | ||||| | | | | || ||| Sbjct 146438 AGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGA--AGAGGTAGGTTCG 146381 Query 133151 CTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208 || ||| | | ||||||||| ||||| ||||| | || ||||| | || Sbjct 146380 CTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAATATT 146321 Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| |||||| || ||||| ||||| || ||||| | ||| || || Sbjct 146320 CTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCT 146261 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||||| || || || |||||||| ||||| || || ||||| ||||| || | Sbjct 146260 GAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAGGCAAGGAT 146201 Query 133329 GTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTT 133385 ||| |||||| |||||| | ||| || | ||| ||| | ||||| Sbjct 146200 GTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGGAGATCCTT 146141 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| || || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 146140 GGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 146087 >seq2 Length=4137638 Score = 122 bits (134), Expect = 9e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || |||||| || |||| | | | Sbjct 2555531 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCG 2555590 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| ||||| ||||||||||||| || Sbjct 2555591 ACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTG 2555649 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 2555650 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAG 2555709 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | || || ||| | || || || Sbjct 2555710 GAATCCACACTTCATCTCGTCCTCCG 2555735 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || |||||| | | Sbjct 2555749 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 2555808 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 2555809 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCA 2555867 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| ||||| || || || |||| || ||||| |||||||| Sbjct 2555868 ACAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAA 2555927 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || ||||| ||||| || ||| || | || || Sbjct 2555928 CATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 2555975 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||||||| |||| || ||| | || Sbjct 2555239 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 2555298 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| || || | ||||| Sbjct 2555299 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 2555358 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || || | ||||||||| || |||||| Sbjct 2555359 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAAC 2555418 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || || || Sbjct 2555419 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCG 2555453 >seq44 Length=1303881 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 485632 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 485573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 485572 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 485514 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 485513 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 485454 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 485453 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 485418 >seq12 Length=4746347 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 3789803 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 3789862 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 3789863 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 3789922 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 3789923 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 3789982 Query 38433 G 38433 | Sbjct 3789983 G 3789983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172312331520