Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq22 232 8e-56 seq1 91.5 2e-13 >seq22 Length=6460479 Score = 232 bits (256), Expect = 8e-56 Identities = 459/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| ||||||||||| || || | | |||||| | | || | ||||| || || Sbjct 4231500 CTTGTGTTTACGTTTGAATTCGTTAACGAAGTGGCTGACCAGACGGTTGTCGAAGTCCTC 4231559 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 4231560 ACCACCCAAGTGAGTGTCGCCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 4231619 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | |||||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 4231620 GAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGTTGCGCTCACC 4231679 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| || || || || || || || || || || || || Sbjct 4231680 CTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 4231739 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| ||||| || || | ||||| || || || || || || || ||||| Sbjct 4231740 GAGAACGTTGAGGCCGGCGATGAGACCAGCATCCTTGGTGGCCTGACGCTGAGAGTCGTT 4231799 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| |||||| || || || || Sbjct 4231800 GAAGTAGGCAGGGACGGTGACAACAGCGTTGTTGACAGTCTCACCGAGGTAAGACTCAGC 4231859 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | || ||| ||||| || | ||| | || ||||| || | | || | ||| | Sbjct 4231860 AGTCTCACGCATCTTGGTGAGGATCATGGCAGAGATCTCCTCGGGAGTGAAGTTCTTCTT 4231919 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||||| || || ||||| || || | ||| || |||| | ||| | | | Sbjct 4231920 CTCACCCTTGAACTCAACCTCGATGACGGGCTT---GCCAGCCTTGTCGATGATGGTGAA 4231976 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||||||| | || |||| || | ||||| | ||||| | || Sbjct 4231977 GGGGAAGTGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGACCGATCAATCG 4232036 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | |||||||||||| |||||||| || || || || Sbjct 4232037 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCC 4232096 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| || || || || || Sbjct 4232097 AATGAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTGCGGTTACCCTG 4232153 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 4232154 GTCGTTGGCGATGATATC 4232171 Score = 154 bits (170), Expect = 2e-32 Identities = 365/545 (67%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | | ||| || |||||||| | | || Sbjct 4531244 AGGTCCTCGAAACGGGCACGGGTGATGGTCATCTGGAAGTCCTCGCCGTCGAAGAGAGAG 4531303 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| | || || || | ||| || ||||| || |||||||| | Sbjct 4531304 TCGATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCACAAG 4531361 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 4531362 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTGGACTTTCGGG 4531421 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| | || | | ||||| || | |||||||| || Sbjct 4531422 TGAACTCCTTCTTGCAGTGATCGA-GAAGGTTTGTGTCGAAGTCCTGGCCACCCAAATGG 4531480 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || || || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 4531481 GTATCACCAGCAGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 4531540 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | || | | |||| Sbjct 4531541 TCGAAAGTACCACCACCGAGATCGTAGATGAGGACGTTGCGCTC--CTTC-TCGGACTTA 4531597 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 4531598 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGGACG 4531657 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| |||||| Sbjct 4531658 TTAAGACCAGCGATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 4531717 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 4531718 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 4531777 Query 7775 TTCAT 7779 ||||| Sbjct 4531778 TTCAT 4531782 Score = 114 bits (126), Expect = 2e-20 Identities = 532/844 (63%), Gaps = 3/844 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| || ||| || || || || || || Sbjct 4230434 TCATCCTCCTCCTTGTACTTCTCGGCATCGCTGAGCATGCGCTCGATCTCCTCCTTGGAC 4230493 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 4230494 AGGCGGCCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTTCCAGTGCCCTTCTCGACG 4230553 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 4230554 GCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAAGTGACCTCAATCTGGGGAACA 4230613 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 4230614 CCACGGGGGGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTG 4230673 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 4230674 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACGCCAGGCTGGTTGTCGGAGAAG 4230733 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 4230734 GTAGAGAAGACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 4230793 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || || | || ||||| ||||| | || || | || | | Sbjct 4230794 ATCATACCACCAGCGGTCTCAATACCGAGAGAGAGAGGCGCGACATCGAGAAGGAGGATC 4230853 Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | | ||||| | | ||| || || ||||| | || ||| Sbjct 4230854 TCGTTGGTGGACTTGCTGGAGGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 4230913 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || | || || ||||| || || || Sbjct 4230914 TAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCG 4230973 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | || | ||||| || || ||||||||||| | ||||| || | Sbjct 4230974 GTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGG 4231033 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || |||||||| | ||| ||| ||||| || | ||| Sbjct 4231034 ACGAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGAT 4231093 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || ||||| || || || ||||| ||||| || ||||| || Sbjct 4231094 CGGAAGAGATCCTGGCAAAGCTCCTCGAATCGGGCTCGGGTGATGGAGGTGTAGAAGTCG 4231153 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| | | || || || || || | || || || | ||||| | |||||| Sbjct 4231154 ATACCCTCGAACAGAGAGTCGATCTCGATAGAGGTCTGAGCGGAAGAAGAAAGGGTTCGC 4231213 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || |||||||| || || || | ||| || || ||||| ||| ||||| ||| Sbjct 4231214 TTGGCTCGCTCACAAGCAGTGCGGAGACGTCGCAGAGCACGGACGTTGGTGGAAAGATCC 4231273 Query 7406 TTCT 7409 |||| Sbjct 4231274 TTCT 4231277 >seq1 Length=4664806 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||| | ||||| || |||| ||| Sbjct 3875451 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 3875510 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || ||| ||| Sbjct 3875511 TTCTGGATCTCAAGGATAGAGATATCGAAGGTACCACCACCAAGATCGTAAACAGCGACG 3875570 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| | || ||| || |||||||| || | || || || || || || Sbjct 3875571 ATGCGGTCGGCCTC------CTTCTCAAGACCGTAGGCAAGGGCGGCAGCGGTAGGCTCG 3875624 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT-TGTCG 7695 || | | ||| ||| ||| || || || || | | ||||| || || ||| ||||| Sbjct 3875625 TTGACGACACGGAGAACGTTGAGACCGGCGATTTGTCCGGCATCCTTGGT-GCTCTGTCG 3875683 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || |||||||| ||||| || || || || ||||| |||| | ||| |||| ||| Sbjct 3875684 CTGAGAATCGTTGAAGTAAGCAGGAACGGTGACGACAGCGTTCTTGATAGGCTTAGAGAG 3875743 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 3875744 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 3875779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132180745520