Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq73 219 5e-52 seq33 120 4e-22 seq22 109 7e-19 >seq73 Length=2503951 Score = 219 bits (242), Expect = 5e-52 Identities = 521/774 (67%), Gaps = 35/774 (5%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGG--AAGATATTGATTCTG 111669 || ||| ||||| ||||||| || | || ||||| |||||| | |||||||| || Sbjct 1797220 CCTCAGCACATGATCATGCGTGTGTCTATTGGTAT--ATGGGGTGATGATATTGAGCGTG 1797163 Query 111670 TTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | |||||||||||| || |||||| | | |||| ||| || | || ||||||| Sbjct 1797162 TCTTGGAGACATACAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCACCCTCT 1797103 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||||||||| || |||||| | ||| || ||| | ||| | ||||||| Sbjct 1797102 TCAACGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGATATGAAGGAGG 1797043 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || | || || || | || |||| |||||| || || ||| ||||| Sbjct 1797042 ACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGCTG 1796983 Query 111850 GTGGTATCGGG----ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 ||||||| || |||| || | | || | |||| | ||| || || | Sbjct 1796982 GTGGTATTGGTCTCAATGCCCACCGAA----TCCGTGCCACT--GGCTCCTACATTGCTG 1796929 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| || ||| ||| | ||| || |||| ||||| || || || ||| ||| || | Sbjct 1796928 GTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCC 1796869 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017 |||| || | || | ||| | |||| || || | || |||| ||||||| Sbjct 1796868 GCTACGTTGATCAGGGTGG---TAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGC 1796812 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| Sbjct 1796811 CTTGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGG 1796752 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || |||||| || ||| || |||||||| || || || ||||||||| | |||| Sbjct 1796751 TCCGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTG 1796692 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 || ||| || | ||| | ||| | || || || || || ||||| |||| | Sbjct 1796691 AGAAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCT 1796632 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 ||||| |||||||| ||||||||| ||||||||| ||| || || | | || | Sbjct 1796631 ACGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA 1796574 Query 112258 CGGTGCCAGC--TGCC--GATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 || ||| | ||| || | | ||| | || || ||| || | || |||||||| || Sbjct 1796573 --GT-CCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1796517 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 | || | ||||||||||| || |||||||||| ||||| || || ||||| Sbjct 1796516 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAA 1796463 >seq33 Length=5643559 Score = 120 bits (132), Expect = 4e-22 Identities = 351/524 (67%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 101876 |||||||| || ||| | |||||||| |||||| | |||||||||| | | ||| Sbjct 146114 TGGACTGCCGAGGAGATTGATCTCTCCAAGGATCTCCACGATTGGAACAACCGTC-TGAC 146172 Query 101877 AA-TGAAAAGAAATTCATAAAAT---ACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 101932 | ||| || | ||| | | | ||||||| || ||||| |||| || ||||| || Sbjct 146173 CACTGACGAGCAGTTCTTCATCTCTCACATCCTTGCCTTCTTCGCTGCTTCTGATGGCAT 146232 Query 101933 TGTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGA 101990 ||| ||||| || | | | | | || | ||||| || |||| |||| || || Sbjct 146233 TGTCAACGAGAACCTCGTTGAGCGATTCAGCGGC-GAGGTCCAGATCC-CTGAGGCTCGA 146290 Query 101991 TCTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACT 102049 | ||||| | | ||| |||| ||| | | | || ||||| || || Sbjct 146291 TGCTTCTACGGATTCCAAA-TCATGATGGAGAATATTCACTCCGAGACCTATTCCCTGCT 146349 Query 102050 CATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAA 102108 ||| |||| || || ||||| ||| || ||| | | ||||| | || | | | Sbjct 146350 CATTGACACCTACATCAAGGAGCCTGCCCAGC-GAACCTACCTCTTCAACGCTGTTGATA 146408 Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 102167 | |||| || || | |||||| || || ||||| || ||| | | |||| | | Sbjct 146409 CCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACT 146468 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | | ||||||| | || || | || || || ||| ||||||||||||||| ||| Sbjct 146469 C-TACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGT 146527 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| | | || | |||||||||||||| || |||||||| ||| | ||||||| Sbjct 146528 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCC 146587 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 146588 AACGAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTTGC 146631 >seq22 Length=6460479 Score = 109 bits (120), Expect = 7e-19 Identities = 166/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 16119 |||||||| |||||||||||||| || | || ||| | || ||| || | | || Sbjct 1335716 GGCATCAAGTTCATCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCG-GC-AGT--AA 1335661 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 |||| || || || |||||||| || |||||||| || ||||| |||| || | || | Sbjct 1335660 AGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCG 1335602 Query 16180 AACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 |||| | || ||| || ||| || |||||| |||| ||||| ||||| || |||||| Sbjct 1335601 GACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTA 1335542 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || ||| | |||||| |||| |||| ||||| || Sbjct 1335541 CCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACC 1335492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741794776160