Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq73 228 1e-54 seq22 113 5e-20 >seq73 Length=2503951 Score = 228 bits (252), Expect = 1e-54 Identities = 571/860 (66%), Gaps = 23/860 (3%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || || | ||||||||||| |||||| | |||||| | Sbjct 1796364 GGCAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATG 1796423 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| || || || || || || | ||||| ||||| ||||| | Sbjct 1796424 ATCTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 1796483 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 || || ||||||||||| |||||| |||| | || ||||| ||||| | || ||| || Sbjct 1796484 TTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATG 1796543 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTA 106692 || | ||| | | || | | || | |||| ||| ||| | ||| | | |||||| Sbjct 1796544 GCATACCAAAGCTTCTGGGCCTTG----ATGGACTTGCGACCCTTACCTTCCCTCTCGTA 1796599 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 ||| ||||||||| |||||||| ||||| ||||| ||||| || || || Sbjct 1796600 CTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTT 1796659 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | || | ||| | || || |||||| ||||||||||||||||| || || Sbjct 1796660 GGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGAT 1796719 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| |||| || || || | || |||| || | ||| ||||| ||| | Sbjct 1796720 CCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAG 1796779 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 ||||||||||| | || ||| |||||||| |||||||| |||| || | || || Sbjct 1796780 ATCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGG 1796839 Query 106933 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 ||| ||| | |||| || ||||| || ||| ||| || || || ||||| || Sbjct 1796840 TCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGG 1796899 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 || || ||| | ||| ||| || || || ||| || | ||| ||| Sbjct 1796900 AACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGG----CACGGA 1796955 Query 107050 ATGGATGTGCAT----CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | | || |||| |||||||| |||||| ||| || || ||||| | | | Sbjct 1796956 TTCGGTGGGCATTGAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGA 1797015 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || |||||||||||| || ||||||||| | | | | |||||| ||| | Sbjct 1797016 GGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAA 1797075 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 ||| ||| || |||||||| ||||||||||| || | || || ||| | | ||| Sbjct 1797076 GCTGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGA--AGAACTT 1797133 Query 107226 G--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 | |||||| || |||||||||||||||| ||||| || || || || || || Sbjct 1797134 GCTGGACATAAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCATATACCAAT 1797193 Query 107284 GGCCACACGCATAAACATGT 107303 | ||||||||| | ||||| Sbjct 1797194 AGACACACGCATGATCATGT 1797213 >seq22 Length=6460479 Score = 113 bits (124), Expect = 5e-20 Identities = 165/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAA 9426 |||||||| |||||||||||||||||| | || ||| | || |||| | || Sbjct 1335716 GGCATCAAGTTCATCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCGGCAG----TAA 1335661 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 |||| || || || | ||||| || |||||||| || ||||| |||| || | || | Sbjct 1335660 AGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCG 1335602 Query 9487 AACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 |||| | || ||| || ||| || |||||| |||| ||||| ||||| || |||||| Sbjct 1335601 GACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTA 1335542 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| || ||| | |||||| ||||| |||| ||||| || Sbjct 1335541 CCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACC 1335492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980224768720