Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq22 86.0 5e-12 >seq22 Length=6460479 Score = 86.0 bits (94), Expect = 5e-12 Identities = 200/294 (68%), Gaps = 17/294 (6%) Strand=Plus/Plus Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745 |||||||| ||||||| | || |||||| ||||| || | |||| | | | ||||| Sbjct 2911782 TGAGGGTCATAACCCTTGACGGTGAAATCTTCTGCTTTCCAACCGTCAATGCT-TCCACT 2911840 Query 29746 CTCCTGTTTATC-------CTC-AG-TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGA 29796 || ||| || ||| || | |||||| | || ||||| | ||| || || Sbjct 2911841 CT----TTTCTCGAGAAATCTCTAGCTCTGGGAA-GTCTCGCGGCTCGCGCTCCAGTTGG 2911895 Query 29797 GTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAA-A 29855 |||| || | || ||||| || ||||| || ||||| || |||| ||| || | Sbjct 2911896 ATCTTAAGAGCATCAACGTGGTCGAGGTACACATGAGCATCACCCATAACATGGGTAAGA 2911955 Query 29856 CTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGC 29915 || ||| || | || | ||||| || | ||||| || | || | ||| || || Sbjct 2911956 CT-TCCAGGAACCAGGTCACAAACGTGCGCAAGCATGTGTGTCAATAGGGCGTAACTAGC 2912014 Query 29916 GATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||| ||||| || ||||| |||||||| | ||||||||||| | |||||| Sbjct 2912015 AATGTTGAAGGGAACACCGAGACCCATGTCGCAAGACCTCTGGTACAACTGACA 2912068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 ||||| || || || || | ||||||||| || ||||| || ||||| || || |||| Sbjct 2912298 TACTCGGCACCAAAGTGTCGCCACTGGAAACCATACACAGGGCCCAGATCGCCAACTTCA 2912357 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT- 30278 | || | | || ||||| | || || | ||| || ||| ||||||||||||| Sbjct 2912358 CGATGGTTCAGTCCGAGGTTGTCAAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTA 2912417 Query 30279 -TACCCCCTTCTCGGAGAGCTCTTTGGAG-TTTGTGGACCCTCTGACGAACCACAGCAGC 30336 |||| |||| | ||| ||| || | || | ||| | ||||| || |||||| || ||| Sbjct 2912418 ATACCGGCTTCGCTGAG-GCTGTTGGAAGATGTGTTG-CCCTC-GATGAACCAGAGGAGC 2912474 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 || | || ||||| |||||| | || || |||||||| |||| Sbjct 2912475 TCGGCGACAACGGCGCGAGTAAAGACACGTTTCGTGGTGAGGAGAGGAA 2912523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617211557894