Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq73 412 6e-110 seq33 192 1e-43 >seq73 Length=2503951 Score = 412 bits (456), Expect = 6e-110 Identities = 1173/1763 (67%), Gaps = 96/1763 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | || ||||||| ||||| || ||||||||||| ||||| Sbjct 1795461 ACAGTGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCCAGTCTTG 1795520 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| |||| | || Sbjct 1795521 AGACCAAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCC-----ATC 1795568 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||||| || || | ||| |||||||| ||| || ||||| | | Sbjct 1795569 GTGGG-ATCCTT------CATGTGAATGTTGAGGGACTGGGACTGATCGATGAAAGCACC 1795621 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | | ||| || | |||||| || |||||| | | Sbjct 1795622 TCGGTCGGCAGCCATCTGGACAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAG 1795681 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| ||| | |||| | |||||||||||| | ||| || | | || | Sbjct 1795682 AGCCTTGACGTCGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAAT 1795741 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | || ||| | |||| || | || ||||| || Sbjct 1795742 ACGGTTCTT---CATGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCA 1795798 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| ||||| | || || | | |||||||| ||| || ||||| Sbjct 1795799 GGGGTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTA 1795858 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||||||||| | || ||||| || ||||| || || Sbjct 1795859 AGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGC 1795918 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCG-ATGAGGCGC-CGAAG-CTCTGCCCA 213082 | || |||||||| | | |||| | | | | | | | ||||| |||| |||| Sbjct 1795919 AAGGAGCAGACTGTTACGGATACCGT--TAGTCTTAACATCCTCTCGAAGGCTCT-CCCA 1795975 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| | | || ||| ||| |||||||||||||| ||||| | ||| || Sbjct 1795976 GTCCCAAAGGTCGGA-AGG--------CTTGACGTTCCACATGTCGAACTGGAGGATACC 1796026 Query 213143 TTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 |||| |||| |||| | | | |||||||| || | ||||||||||| || Sbjct 1796027 ----CTCAGAGGCGGGAGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACT 1796082 Query 213199 CGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTC 213257 ||| ||| || |||||||||| ||||||||| ||||| |||| | ||||||||| Sbjct 1796083 -GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCT 1796141 Query 213258 TTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 | |||||||| ||| ||||||||| || |||| ||||||| || ||||| Sbjct 1796142 CTAGCCTCTGGAGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGT 1796201 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTA 213376 || || | ||||| |||| ||| | || ||| ||| |||| ||| | || ||||| Sbjct 1796202 ACACCAAGACCGATAGGTCGGTGACGCATGTTGCTGTTGCGAGC-CTCTTGCACAGGGTA 1796260 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 |||| |||||||||||||| | ||||||| | || | |||| || ||| Sbjct 1796261 GTGGTTGACATCGATGATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAG 1796320 Query 213437 GTACTCGTGATTGAACACGTAGC---CCCCGTC---CTGCACAAACTCAGGCAGGGCGAT 213490 | | ||||| | |||| || | || | | || |||||||||| | Sbjct 1796321 CTTC------TTGAAATCATAGCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAG 1796374 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 | ||| ||||||||||| || ||||| | || | | |||||| |||||||| ||||| Sbjct 1796375 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCA 1796434 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAAT 213609 ||| || || |||||||||||| ||||||| ||| ||| ||||| | || | || Sbjct 1796435 CAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGG-TTGCTCTTGCGGTTACAGGCAT 1796493 Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCA 213667 ||||||| |||||| ||||| |||||||| ||||| | | || | |||| ||| Sbjct 1796494 CCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGA--TGGCATACCA 1796551 Query 213668 GAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCT-CCGGGCGTAGCCTCGTACTGTTCG 213725 || | | |||||||| || || ||| | || | | |||||||| ||| Sbjct 1796552 AAGCTTCTGGGCCTTGATGGACTTGC--GACCCTTACCTTCCCT---CTCGTACTTCTCG 1796606 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACAC 213785 ||||| | | || || | || || | | || || || || ||| ||| Sbjct 1796607 TAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCAC 1796666 Query 213786 ATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844 |||||| |||| || ||| || |||| || | || |||||| ||||| |||| ||| || Sbjct 1796667 ATGAGGGTCCACTCTCCGTTCTTCTC-AACACGCTTCATGAAAAGGTCAGGGATCCAGAG 1796725 Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904 || ||||||||| | || | ||| ||| || ||| || || ||||| || Sbjct 1796726 GGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAG 1796785 Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT 213964 || ||||||| || |||||||| ||||| | |||||| ||||| || || || | ||| Sbjct 1796786 GAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTT 1796845 Query 213965 G---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAG 214021 | || ||||| || || | ||| ||||||||| || || | || || | Sbjct 1796846 GTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAAC 1796905 Query 214022 CCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCT 214078 |||||||| ||| |||||||| || || || || ||||| | ||| | | | || Sbjct 1796906 ACCGTTGGA-TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGG 1796964 Query 214079 CATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTC 214138 ||| |||| || || ||||| || |||||| |||||||| ||| | | | || || Sbjct 1796965 CATTGAGA--CCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATC 1797022 Query 214139 CATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGG 214198 ||| ||| | |||||||| || | | | | ||||||||| || |||||||| Sbjct 1797023 ATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGG 1797082 Query 214199 CCTGGACGAG--CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 | || | | |||| |||||| || |||||| |||||| | | |||||| | || Sbjct 1797083 --TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGAC 1797140 Query 214257 AGGAGCCTGTAGGTCTCCAGGAC 214279 | || |||| ||||||| ||| Sbjct 1797141 ATAAGGTTGTATGTCTCCAAGAC 1797163 >seq33 Length=5643559 Score = 192 bits (212), Expect = 1e-43 Identities = 489/736 (66%), Gaps = 25/736 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 146923 CTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 146864 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | || || ||| | || ||| | | || | Sbjct 146863 CATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCT-TCTCGTTGCCGAGAGCGACGAGTA 146805 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || ||||| |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 146804 GACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGG 146745 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| ||||| ||||||| ||| || ||||| || | | || Sbjct 146744 -CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATG 146686 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAG------AGCATG 48130 | || ||| || | || | || | || |||| || | || | | Sbjct 146685 TCCT-------GGA-TCATCTGCTTGCTAGCAC-GGCCCTTGAGATGGGAGTGAAGAAGG 146635 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| |||| | ||| ||||| || ||||||| ||||||||||| | | Sbjct 146634 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 146575 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || ||||||||||| || | || || | || ||||||| Sbjct 146574 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 146515 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||| || || | | | || | || || |||||| | Sbjct 146514 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 146455 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || |||||||| |||||||| |||||| || || || || | || | Sbjct 146454 ATCCATCGAATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTG 146395 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 146394 AAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAATAG 146338 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| | |||||| || ||| ||||| ||||||||| | |||||| Sbjct 146337 GTCTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGG 146278 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| || || | ||||| ||| | || ||||| ||||| || ||||| |||||| Sbjct 146277 ATCTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCA 146218 Query 48548 GCAAAGAAGGCAAGGA 48563 || ||||||||||||| Sbjct 146217 GCGAAGAAGGCAAGGA 146202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531891755520