Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 102 9e-17 >seq2 Length=4137638 Score = 102 bits (112), Expect = 9e-17 Identities = 261/397 (66%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | ||||| || || || || || ||||| || || ||||||||||| ||||| || Sbjct 1039690 ACAGCGATAGGGCCAACACCGGGGCCACCACCACCGTGGGGAATACAGAAGGTCTTGTGG 1039749 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| || || ||||| || | ||||| | ||| || Sbjct 1039750 AGGTTGAGATGGCAGACATCAGCGCCGATGTCACCGGGGCTGCAGAGACCAATCTGGGCG 1039809 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | || | | Sbjct 1039810 TTCATGTTGGCACCGTCCATGTAGACGAGACCGCCATGCTCGTGGACAAGGTCGCAGACC 1039869 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || |||| | | || || |||||| || || || ||||||| ||| || | | Sbjct 1039870 TGCTTGATCTCGGGCTCGAAGACACCAAAGGTGGAAGGGTATGTAACCATGATGCCAGCA 1039929 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA--- 138479 |||||| | | | ||| || || ||||| | || ||| | ||| ||| Sbjct 1039930 AGTTCATCCGCGTGCTTGACGCACTTGGCCTTGAGATCCTCGACGTCCAGGTTACCAGTC 1039989 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | | | |||||||||||| || || ||||| || |||||| | || ||||| || Sbjct 1039990 TTAGCGTCACACTTGACAGTGACGACCTTCATACCGGCCATGGCAGCGGAGGCAGGGTTG 1040049 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTC 138576 || || || || || | || ||||| || || |||| Sbjct 1040050 GTGCCGTGAGCAGAAACAGGGATCAGGCAAACCTTTC 1040086 Score = 100 bits (110), Expect = 3e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 139271 ACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGAT 139330 ||| || || | || ||||| | ||||| || || || || || || || |||||||| Sbjct 1040841 ACCGTGGTAGACCGCGTAGAAGGCGGACATGTTGGCAAGAAGAGCCTGGGCCGTGCAGAT 1040900 Query 139331 GTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTA 139390 ||| ||||| || || || | || |||||||||||| | ||| || || || | | Sbjct 1040901 GTTGCTGGTGGCCTTCTCACGTCGAATATGCTGCTCACGAGTCTGGAGAGCGAGACGCAG 1040960 Query 139391 TGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTT 139450 ||||| ||||| || ||| || ||| || | | ||| || ||||| | ||| Sbjct 1040961 AGCAGGCTTGCCGAGGCGATCCTTGGAAACACCGACGAGACGGCCGGGGATCTTGCGCTT 1041020 Query 139451 ATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACC 139510 ||||| || | || || ||||| ||||| || ||||| ||||| |||| || | ||| Sbjct 1041021 GTACTTCTCAGAGGTAGCGAAGAAAGCAGCGTGGGGACCACCGTAGCCCAGGGGGACACC 1041080 Query 139511 AAA 139513 || Sbjct 1041081 GAA 1041083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997835476560