Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10]
78 sequences; 43,168,069 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq22 125 9e-23
seq3 118 1e-20
seq33 113 6e-19
seq73 109 7e-18
seq16 100 3e-15
>seq22
Length=6460479
Score = 125 bits (138), Expect = 9e-23
Identities = 228/333 (68%), Gaps = 12/333 (4%)
Strand=Plus/Minus
Query 18166 GAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACG 18225
||||| || |||||||| || | | || || ||||| |||||| || | ||||
Sbjct 729478 GAGGCTGATATCCAGCCCCAACTCAACCGCCGTCGACCAGGCCAGTCGGCCATCACCACA 729419
Query 18226 CCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTC 18285
|| || ||||| |||||||||| ||||| || ||||| || | ||| |||| |||
Sbjct 729418 CCCCGTAACGAAAAAGATCGCGTCACTATCCACTCCGGCACTGAAGATGGCGTCACTCTC 729359
Query 18286 GGCTCGCCCGTCGGCCTCTT---TGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCC 18342
||| |||| || ||||| ||| ||||| || ||||| || ||||| |
Sbjct 729358 GGCACGCCGATC---CTCTTGACTGTTCCCAACGAGGATCAGCGACCAAAGGACTACGGC 729302
Query 18343 GACATGTGCAAGGTGC------CGCGGCCCTCACACGCCGACTACACCTACATGGCCAAG 18396
||| | || | | | || ||| || ||||||| || ||| | | |||
Sbjct 729301 AACAAGACCATCGACCTCTACCCCCGTCCCAGTCATGCCGACTGGACTTACCTCGAGAAG 729242
Query 18397 TACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGC 18456
|||||| ||||||| || || ||||| ||||| ||||| ||||||||| | |||
Sbjct 729241 TACGGCGTCAAGGCCTCATCTGGCGGTGGCCGCAGCTCTGCTCGCGAGACCATTGCTCGC 729182
Query 18457 GTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489
|| ||||| || || ||||||||||| ||||||
Sbjct 729181 GTGGCCGCTGGTGCTGTCGCCGAGAAGTGGCTC 729149
Score = 105 bits (116), Expect = 8e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| |||||| || || || || || || || ||||| | || ||||| |||
Sbjct 728929 GACAGCACCGGCGGAACCGTCACCTGTGTCATCCGTAATGTGCCCTCTGGTCTCGGTGAG 728870
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||| || |||||| |||| ||||| ||||||
Sbjct 728869 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCTCATGCCATGATGTCCATCCCCGCCACC 728810
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192
||||| |||||| | ||| ||| ||
Sbjct 728809 AAGGGGTTCGAGCTAGGCTCCGGCTT 728784
>seq3
Length=2624975
Score = 118 bits (130), Expect = 1e-20
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250
||||||||| ||||||||||| || || ||| |||| ||||| | || |||||||||||
Sbjct 1909458 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 1909517
Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
|||||||||||| || ||||| || |||||||| || ||||||| | |||
Sbjct 1909518 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 1909567
>seq33
Length=5643559
Score = 113 bits (124), Expect = 6e-19
Identities = 204/290 (70%), Gaps = 15/290 (5%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| ||| ||| | |||||| |||| | |||||||||||||| ||||||
Sbjct 146613 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGCTTC 146554
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAA 869297
|||||||| ||||||| | | || || ||| ||| ||||| |||||||| || || |
Sbjct 146553 TTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCGA 146496
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354
|| | | || || | ||||||| || ||| |||||| | |||||| || |
Sbjct 146495 AGGCAACCAGACGTTGGGCAAAG--GTAGAG----TCCTTGTCCTGGATCCATCGAATGG 146442
Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413
||||||| ||||| || | | | || | || || | ||| ||||||| ||| |
Sbjct 146441 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTC 146382
Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| || ||||||| |||||||| || || || |||||||||||
Sbjct 146381 -GCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTC 146333
Score = 93.3 bits (102), Expect = 5e-13
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| |||||||||||||| | || |||||
Sbjct 146928 GCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 146869
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | |||||| ||| ||| ||||| | ||
Sbjct 146868 TTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACG 146809
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866
|| || ||||| ||||||||||| |||||||| ||| ||| || |||||||||
Sbjct 146808 AGTAGACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCC 146753
>seq73
Length=2503951
Score = 109 bits (120), Expect = 7e-18
Identities = 319/491 (65%), Gaps = 19/491 (4%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| || |||||||| || |||| ||| ||||| || ||||| || || | ||||||||
Sbjct 1796855 CTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGA 1796914
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||||| ||| | ||| || | ||| || | ||
Sbjct 1796915 TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGACC 1796974
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || || ||||| || ||
Sbjct 1796975 AATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTC 1797034
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || | ||||| || || || || || | || ||
Sbjct 1797035 AATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACC 1797094
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| |||| | ||||| || ||| ||
Sbjct 1797095 AGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTGTATGT 1797154
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | || ||| | | |||| | |||||| || || | ||
Sbjct 1797155 CTCCAAGACACGCTCAATATCATC-------------ACCCCATA--TACCAATAGACAC 1797199
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| ||| || || ||||| | |||| | |||| ||||| ||
Sbjct 1797200 ACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGA 1797259
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542
|| || ||| ||| ||||||||| || | || ||||| ||||||| | |||
Sbjct 1797260 TCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGG--AAATCACGGTCGTAGACAATG 1797317
Query 1630543 GCGGCGTCGAG 1630553
|||| ||| ||
Sbjct 1797318 GCGGAGTCTAG 1797328
>seq16
Length=704294
Score = 100 bits (110), Expect = 3e-15
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGC-CGCTCTCGGTGAGGCCCGG 1852098
|| || |||||||| | |||||| | ||||||||| ||| ||| || |||||
Sbjct 537979 AGACCAATCTTGGAACTCGGCTCGCTTGAGCTCATCTTCTGCGC-CTCCCCAAGACCCGG 537921
Query 1852099 CACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCG 1852158
||| | | ||| | || ||| |||||| ||||| || || |||| ||
Sbjct 537920 CACCATGGCGTTCATCAAGTGTGCTCGCTTCTTGTAGCCAAGTTTGGGAAGGTTCTCCAA 537861
Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218
||||||| || ||||||||||||||| |||||||| || || || | ||||||||
Sbjct 537860 GGCAAAGGTGAAGATCTTGCGCTGGTCGATCCCGCCAAGTTGTGCATCCATGTCGAGGTA 537801
Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
|||||| || || |||||||||| |||||||
Sbjct 537800 CTGCTCATCCAGAGCCTGCATGATGGGGTAGA 537769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107132798954726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |