Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22 125 9e-23 seq3 118 1e-20 seq33 113 6e-19 seq73 109 7e-18 seq16 100 3e-15 >seq22 Length=6460479 Score = 125 bits (138), Expect = 9e-23 Identities = 228/333 (68%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 18166 GAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACG 18225 ||||| || |||||||| || | | || || ||||| |||||| || | |||| Sbjct 729478 GAGGCTGATATCCAGCCCCAACTCAACCGCCGTCGACCAGGCCAGTCGGCCATCACCACA 729419 Query 18226 CCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTC 18285 || || ||||| |||||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 729418 CCCCGTAACGAAAAAGATCGCGTCACTATCCACTCCGGCACTGAAGATGGCGTCACTCTC 729359 Query 18286 GGCTCGCCCGTCGGCCTCTT---TGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCC 18342 ||| |||| || ||||| ||| ||||| || ||||| || ||||| | Sbjct 729358 GGCACGCCGATC---CTCTTGACTGTTCCCAACGAGGATCAGCGACCAAAGGACTACGGC 729302 Query 18343 GACATGTGCAAGGTGC------CGCGGCCCTCACACGCCGACTACACCTACATGGCCAAG 18396 ||| | || | | | || ||| || ||||||| || ||| | | ||| Sbjct 729301 AACAAGACCATCGACCTCTACCCCCGTCCCAGTCATGCCGACTGGACTTACCTCGAGAAG 729242 Query 18397 TACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGC 18456 |||||| ||||||| || || ||||| ||||| ||||| ||||||||| | ||| Sbjct 729241 TACGGCGTCAAGGCCTCATCTGGCGGTGGCCGCAGCTCTGCTCGCGAGACCATTGCTCGC 729182 Query 18457 GTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489 || ||||| || || ||||||||||| |||||| Sbjct 729181 GTGGCCGCTGGTGCTGTCGCCGAGAAGTGGCTC 729149 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| |||||| || || || || || || || ||||| | || ||||| ||| Sbjct 728929 GACAGCACCGGCGGAACCGTCACCTGTGTCATCCGTAATGTGCCCTCTGGTCTCGGTGAG 728870 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||| || |||||| |||| ||||| |||||| Sbjct 728869 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCTCATGCCATGATGTCCATCCCCGCCACC 728810 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 ||||| |||||| | ||| ||| || Sbjct 728809 AAGGGGTTCGAGCTAGGCTCCGGCTT 728784 >seq3 Length=2624975 Score = 118 bits (130), Expect = 1e-20 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| || || ||| |||| ||||| | || ||||||||||| Sbjct 1909458 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 1909517 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||| || ||||| || |||||||| || ||||||| | ||| Sbjct 1909518 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 1909567 >seq33 Length=5643559 Score = 113 bits (124), Expect = 6e-19 Identities = 204/290 (70%), Gaps = 15/290 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| | |||||||||||||| |||||| Sbjct 146613 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGCTTC 146554 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||| ||||||| | | || || ||| ||| ||||| |||||||| || || | Sbjct 146553 TTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCGA 146496 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | || || | ||||||| || ||| |||||| | |||||| || | Sbjct 146495 AGGCAACCAGACGTTGGGCAAAG--GTAGAG----TCCTTGTCCTGGATCCATCGAATGG 146442 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 ||||||| ||||| || | | | || | || || | ||| ||||||| ||| | Sbjct 146441 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTC 146382 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| |||||||| || || || ||||||||||| Sbjct 146381 -GCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTC 146333 Score = 93.3 bits (102), Expect = 5e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 146928 GCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 146869 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | |||||| ||| ||| ||||| | || Sbjct 146868 TTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACG 146809 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866 || || ||||| ||||||||||| |||||||| ||| ||| || ||||||||| Sbjct 146808 AGTAGACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCC 146753 >seq73 Length=2503951 Score = 109 bits (120), Expect = 7e-18 Identities = 319/491 (65%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || |||||||| || |||| ||| ||||| || ||||| || || | |||||||| Sbjct 1796855 CTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGA 1796914 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||||| ||| | ||| || | ||| || | || Sbjct 1796915 TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGACC 1796974 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || || ||||| || || Sbjct 1796975 AATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTC 1797034 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || | ||||| || || || || || | || || Sbjct 1797035 AATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACC 1797094 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | ||||| || ||| || Sbjct 1797095 AGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTGTATGT 1797154 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | || ||| | | |||| | |||||| || || | || Sbjct 1797155 CTCCAAGACACGCTCAATATCATC-------------ACCCCATA--TACCAATAGACAC 1797199 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || || ||||| | |||| | |||| ||||| || Sbjct 1797200 ACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGA 1797259 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542 || || ||| ||| ||||||||| || | || ||||| ||||||| | ||| Sbjct 1797260 TCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGG--AAATCACGGTCGTAGACAATG 1797317 Query 1630543 GCGGCGTCGAG 1630553 |||| ||| || Sbjct 1797318 GCGGAGTCTAG 1797328 >seq16 Length=704294 Score = 100 bits (110), Expect = 3e-15 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGC-CGCTCTCGGTGAGGCCCGG 1852098 || || |||||||| | |||||| | ||||||||| ||| ||| || ||||| Sbjct 537979 AGACCAATCTTGGAACTCGGCTCGCTTGAGCTCATCTTCTGCGC-CTCCCCAAGACCCGG 537921 Query 1852099 CACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCG 1852158 ||| | | ||| | || ||| |||||| ||||| || || |||| || Sbjct 537920 CACCATGGCGTTCATCAAGTGTGCTCGCTTCTTGTAGCCAAGTTTGGGAAGGTTCTCCAA 537861 Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 ||||||| || ||||||||||||||| |||||||| || || || | |||||||| Sbjct 537860 GGCAAAGGTGAAGATCTTGCGCTGGTCGATCCCGCCAAGTTGTGCATCCATGTCGAGGTA 537801 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 |||||| || || |||||||||| ||||||| Sbjct 537800 CTGCTCATCCAGAGCCTGCATGATGGGGTAGA 537769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132798954726