Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq33 131 3e-24 seq3 122 1e-21 seq16 111 2e-18 seq6 95.1 2e-13 >seq33 Length=5643559 Score = 131 bits (144), Expect = 3e-24 Identities = 231/331 (70%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| | |||||||||||||| |||||| Sbjct 146613 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGCTTC 146554 Query 794401 TTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 |||||||| ||||| |||| || || || ||| ||||| |||||||| || || Sbjct 146553 TTGAGCCAGAAGATGGAGGCAAAGGCACCGC---TGAAGAAGATACCCTCGACAGCAGCG 146497 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | || || || | |||||| || || | ||| | | |||||| || || Sbjct 146496 AAGGCAACCAGACGTTGGGCAAAGGT----AGAGTCCTTGTCCTGGATCCATCGAATGGC 146441 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | || || | ||| ||||||| ||| | Sbjct 146440 CCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTC- 146382 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | || ||||||| ||||||||| ||||| || || |||||||| ||||| || | Sbjct 146381 GCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAATAT 146322 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||| ||||| || || ||||| Sbjct 146321 TCTCCATCATGATTTGGAATCCGTAGAAGCA 146291 Score = 89.7 bits (98), Expect = 8e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 146910 ACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAG 146851 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGGCGA 794034 ||||| | | | ||| ||||||| ||||| ||||| || || ||||| |||| Sbjct 146850 GGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACG--AGTAGACGGTCAGCGA 146793 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 | || ||||||||||| ||| ||| || ||||||||| | || || ||| || | Sbjct 146792 CAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCACAGGGGAGAG 146733 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| ||| ||||| | ||| || |||||| || Sbjct 146732 CCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATC 146696 >seq3 Length=2624975 Score = 122 bits (134), Expect = 1e-21 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 ||||||||| ||||||||||||||||| ||| | || ||||| ||||| |||||| | || Sbjct 1909458 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 1909517 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 |||||||||||| || ||||| || |||||||| || ||||||| | ||| Sbjct 1909518 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 1909567 >seq16 Length=704294 Score = 111 bits (122), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||| |||||||||| | |||||| | ||||||||| ||| || |||||| Sbjct 537979 AGACCAATCTTGGAACTCGGCTCGCTTGAGCTCATCTTCTGCGCCTCCCCAAGACCCGGC 537920 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| | ||| | || ||| ||||| |||||| || || |||| || Sbjct 537919 ACCATGGCGTTCATCAAGTGTGCTCGCTTCTTGTAGCCAAGTTTGGGAAGGTTCTCCAAG 537860 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 ||||||| |||||||||||||||||| |||||||| || || || | |||||||| | Sbjct 537859 GCAAAGGTGAAGATCTTGCGCTGGTCGATCCCGCCAAGTTGTGCATCCATGTCGAGGTAC 537800 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593 ||||| || || |||||||||| ||||||| Sbjct 537799 TGCTCATCCAGAGCCTGCATGATGGGGTAGA 537769 >seq6 Length=2449105 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || || | | Sbjct 75355 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCAGGGAG 75414 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 75415 GATGAGACGAACTGAGGTCTGGATCTCTCGGG 75446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238102784242