Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 seq44 87.8 4e-12 >seq2 Length=4137638 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct 2555977 TACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAG 2555918 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||||| |||||||| || ||||| ||||| |||| ||||| || |||| Sbjct 2555917 AAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAG 2555858 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || || || || || || ||| | || | Sbjct 2555857 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGA 2555798 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || || | ||||| || || || ||||| Sbjct 2555797 CTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || ||||| || ||||| ||||| || || | | | | |||| Sbjct 2556191 CGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCG 2556132 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || || || || || ||||| Sbjct 2556131 TCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 2556072 Query 82716 TCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| ||||| || || || ||||| || || | | ||| || || | || || Sbjct 2556071 TCTTGAATC-TTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGAT 2556013 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 2556012 AGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 2555977 Score = 84.2 bits (92), Expect = 4e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || || || || | || ||| || || || || || Sbjct 2555723 TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGC 2555664 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | ||||| || ||||| || || ||||| || || ||||| Sbjct 2555663 TTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTC 2555604 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || || || || ||||| | || || || | ||| || |||||||| || Sbjct 2555603 GACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTG 2555544 Query 82788 AACGTCTTTAC 82798 | ||||| || Sbjct 2555543 AGGGTCTTGAC 2555533 >seq44 Length=1303881 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || || | | || Sbjct 485418 CGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 485477 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| |||| || || || || || || || ||||| Sbjct 485478 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 485537 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || ||||| || || || || || || | || ||| Sbjct 485538 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 485597 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || || | ||||| || || |||||||| || Sbjct 485598 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 485635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826218786442