Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 107 5e-18 seq33 89.7 1e-12 >seq1 Length=4664806 Score = 107 bits (118), Expect = 5e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 |||||||||| || ||| ||||| ||| |||| | ||| ||||||||||| |||| Sbjct 2933547 TGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAAAAGAAACTTGG 2933606 Query 279933 TAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 | ||||| | |||| | | || | |||||||| || ||||| | | || || | Sbjct 2933607 TCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAACGGCGTACCACC 2933666 Query 279993 ACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 ||||||| |||||||||| | || |||| ||||| || | ||| ||| ||||| Sbjct 2933667 ACGGTGAGCAGTCTCTTCAACAGACCATCATAGGCCTTGCTCAGAACTTTGTGGGTTCAA 2933726 Query 280053 ACAACTTAAATCTGCTTTCA-CCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAA 280111 ||||| | || |||||| | || | ||| | || |||||||| || | ||| Sbjct 2933727 ACAACATCAA-CTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACTTGCCGGTGGCTCT 2933785 Query 280112 GATCATGGTAGTGCTCGTTACAT 280134 ||| || ||| |||||||||| Sbjct 2933786 GATGCTGCCAGTCCTCGTTACAT 2933808 >seq33 Length=5643559 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 352851 TTGGAGACAAGTTCGCTTCTCGATCTGCTCAAAAAGGAACAATTGGAATGTTGCTCAGTG 352910 |||| |||||||| |||||||| | |||||| || || ||||| |||| | | | Sbjct 1964177 TTGGTGACAAGTTTGCTTCTCGTCACGGTCAAAAGGGTACCATTGG--TGTTACCTATCG 1964120 Query 352911 AAA--AGGATATGCCTTTCGACAAAAATGGCTTAAAACCTGACATTATTATTAATCCAAA 352968 | | |||||||||||||| || | | ||||| | || || |||||||| || || | Sbjct 1964119 ACAGGAGGATATGCCTTTCAGCAGAGAAGGCTTGACTCCCGATATTATTATCAACCCTCA 1964060 Query 352969 TGCGATTCCCTCTAGAATGACAATAGCTCA 352998 || ||||||||| |||||||||| || || Sbjct 1964059 CGCCATTCCCTCTCGAATGACAATTGCCCA 1964030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811613928958