Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq33 170 3e-36 >seq33 Length=5643559 Score = 170 bits (188), Expect = 3e-36 Identities = 377/548 (69%), Gaps = 27/548 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| || || ||||| ||||||||| | || | Sbjct 146077 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAGGAGATTGATC 146135 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCA 1455888 || | || ||||| ||| || |||| | ||||||| |||| Sbjct 146136 TCTCCAAGGATC---TCCACGATTGGAACAACCGTCTGACCACTGACGAGCAGTTCTTCA 146192 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| |||| ||||| || ||| || |||||||| || ||||||||| | Sbjct 146193 TCTCTCACATCCTTGCCTTCTT-CGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTT 146251 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | |||||||| | || ||||| || | || ||||| ||||| ||| Sbjct 146252 GAGCGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATC 146311 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || || || ||||| || ||||| || || || || ||||||||| ||||||| Sbjct 146312 ATGATGGAGAATATTCACTCCGAGACCTATTCCCTGCTCATTGACACCTACATCAAGGAG 146371 Query 1456069 CCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | || | ||| ||||||| ||| | || || | || | | | || || Sbjct 146372 CCTGCCCAGC-GAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAA 146430 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 ||| |||||||| || |||||| | |||||| ||| || ||||||| | || Sbjct 146431 GGCTGACTGGGCCATTCGATGGATCCAGGACAAGGA----CTCTAC-CTTTGCCCAACGT 146485 Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCT-CGG-GCAGTTTCTGCGCCATCT 1456241 || || | ||| || || |||||||| ||||| ||| ||| || || | | |||||| Sbjct 146486 CTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCT 146543 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | |||||||||||||| ||||||||||||||| || ||| |||||| | ||| | Sbjct 146544 TCTGGCTCAAGAAGCGTGGCCTCATGCCCGGT-TTGACCTTCTCCAACGAGCTCATCTCT 146602 Query 1456302 CGCGACGA 1456309 || ||||| Sbjct 146603 CGTGACGA 146610 Score = 86.0 bits (94), Expect = 9e-11 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || |||||| || ||| | ||||| ||| ||| | || || || || | ||| Sbjct 146696 GATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTGCTTGGC 146755 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| ||| | || ||| ||||||||||| ||| ||||| ||||| || |||| | Sbjct 146756 ATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTT-GTCGCTGACCGTCTACTCGTCG 146813 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 | |||||| || ||||| ||| | | | ||||| ||| | |||||| ||| Sbjct 146814 CTCTCGGCAACG-AGAAGGTTTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATC 146872 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || || || || ||| ||||| || Sbjct 146873 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGT 146932 Query 1456771 GTC 1456773 ||| Sbjct 146933 GTC 146935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803676756636