Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq73 235 7e-57 seq22 87.8 2e-12 >seq73 Length=2503951 Score = 235 bits (260), Expect = 7e-57 Identities = 930/1440 (65%), Gaps = 45/1440 (3%) Strand=Plus/Plus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| |||||||| || ||| || | | |||| ||||| | ||||| || Sbjct 1795802 GTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGG 1795861 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || ||||| || || || |||| || || | ||| ||| || ||||| || || | Sbjct 1795862 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAG 1795921 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC-CTTGAGAACA-TCCCAGTCG 110845 | ||||||||||| | ||| || ||| | | | | || || | |||||||| Sbjct 1795922 GAGCAGACTGTTACGGATACCGTTAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCC 1795979 Query 110846 TAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || || || |||| ||||||| ||||| || | || | || ||||| Sbjct 1795980 CAAAGGTCGGAAGGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGG 1796038 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCA 110963 |||||||| ||||| |||| ||| | | | ||||| | ||| | || | Sbjct 1796039 AGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG-GCAGTGA 1796097 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| ||||| || ||||| |||||||| | || | ||| | || || || | Sbjct 1796098 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1796157 Query 111024 CAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 | || | ||| || | || || |||| || ||||| || ||||| | ||| ||| Sbjct 1796158 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1796216 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCA 111139 |||| ||| ||||| || || | ||| || ||| || || || || || Sbjct 1796217 GGTCGGTGACGCATGTTG--CTGTTGCG-AGCCTCTTGCACAGGGTAGTGGTTGACATCG 1796273 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| | || | ||||| || ||| | ||| || || | ||||| Sbjct 1796274 ATGATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCA 1796333 Query 111200 AAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 | || || ||| |||| ||| | || ||||| | || || | |||||| Sbjct 1796334 TA---GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAA 1796390 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 ||||| |||||| | |||||| | || || || || | || || || Sbjct 1796391 ACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGG 1796450 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | ||||| ||||| ||||| ||| || ||||||||||| |||||| || Sbjct 1796451 ATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAG 1796510 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTAC 111435 || | || ||||| ||||| | | ||| || || | ||||| | || | | || | Sbjct 1796511 GGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG--- 1796567 Query 111436 AATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 |||| ||| | || | || ||| ||||||||| ||||||||| |||||||| || Sbjct 1796568 -ATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTC 1796626 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| ||||| ||||| || || || || || | || | ||| | || Sbjct 1796627 ACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTT 1796686 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 | |||||| ||||||||||||||||| || ||||| |||| || || || | Sbjct 1796687 CTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGC 1796746 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | ||| ||||| ||| | ||||||||||| | || ||| ||||| Sbjct 1796747 GCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTG 1796806 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATA 111729 ||| |||||||| |||| || | || || ||| ||| | |||| || || Sbjct 1796807 CCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTA 1796866 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 ||| || ||| ||| || || || ||||| |||| || ||| | ||| ||| || || Sbjct 1796867 GCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGT 1796926 Query 111790 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT----CCCAATACCCC 111845 || ||| || | ||| ||| | | || |||| |||||||| | Sbjct 1796927 ACCAGCAATGTAGGAGCCAGTGG----CACGGATTCGGTGGGCATTGAGACCAATACCAC 1796982 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| || || ||||| | | || || |||||||||||| || || Sbjct 1796983 CAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGT 1797042 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| | | | | |||||| ||| | ||| ||| || |||||||| |||| Sbjct 1797043 CCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTGA 1797102 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 ||||||| || | || || ||| | | |||| |||||| || |||||||||||| Sbjct 1797103 AGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTGTATGTCTCCAA 1797160 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| ||||| || || || || || || | || ||||||| ||||| ||| || Sbjct 1797161 GACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAGG 1797220 >seq22 Length=6460479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/294 (68%), Gaps = 14/294 (5%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAAA 11685 ||||||| |||||||||||||||||| | || ||| | || |||| | ||| Sbjct 1335715 GCATCAAGTTCATCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCGGCAG----TAAA 1335660 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 ||| || || || | ||||| || |||||||| || ||||| |||| || | || | Sbjct 1335659 GAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCGG 1335601 Query 11746 GCA-CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 || | || ||| || ||| | |||||| || | ||||| |||||||| ||||| | Sbjct 1335600 ACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTAC 1335541 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACTTC-CAAA 11862 | ||||| || ||| | || ||| | || ||| | |||||||| | || | || Sbjct 1335540 CGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACCGAGGTCGCTAA 1335481 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | | || ||||| ||| ||||| || || | || | ||||| || ||||| Sbjct 1335480 ACTTTTC-AGGGTT-CTTCAGAAACTCGACGACTTCCTGGAGTTCCTCCTTGGC 1335429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031387668800