Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq73 210 3e-49 seq33 143 3e-29 >seq73 Length=2503951 Score = 210 bits (232), Expect = 3e-49 Identities = 961/1507 (64%), Gaps = 49/1507 (3%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| || ||| || | | | || || |||| ||||| ||| Sbjct 1795803 TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGC 1795862 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| ||||| |||| || || | || ||| || ||||| || || | | Sbjct 1795863 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGG 1795922 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC-CTTGAGAGCG-TCCCAGTCGT 118320 || || |||||||||| ||| || | ||| | | | || || || |||||||| Sbjct 1795923 AGCAGACTGTTACGGATACCGTTAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCCC 1795980 Query 118321 AGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 118380 | | | || | | |||||| || |||||||||||||| | || || || | Sbjct 1795981 AAAGGTCGGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAG 1796040 Query 118381 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGA 118437 | |||| || || || || ||||| ||| ||||| | ||||| || || Sbjct 1796041 AACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG---GCAGTGA 1796097 Query 118438 GGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 118497 |||| ||||| || || || ||||| || | || | | | ||||| || | Sbjct 1796098 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1796157 Query 118498 CAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 118556 | || | | || || | || || |||| || ||||| || ||||| || || || Sbjct 1796158 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1796216 Query 118557 GGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 118616 || || || | ||| || || ||||| | ||| || || || |||||| Sbjct 1796217 GGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATG 1796276 Query 118617 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 118676 | | | || | || | ||||||| ||| | ||| ||||| | | ||||| | Sbjct 1796277 ATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCATA- 1796335 Query 118677 CTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 118733 || || ||| |||| ||| | ||| ||||| | || || || || || ||| Sbjct 1796336 --GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACA 1796393 Query 118734 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATG 118793 | | |||||| || |||||| || || || ||||||| || || || ||| Sbjct 1796394 GCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGGATG 1796453 Query 118794 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGC 118853 ||||| | |||||| || || ||| |||||| |||||||||||||||||| | || Sbjct 1796454 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGG 1796513 Query 118854 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGT 118912 | || ||||| || |||| || ||| || || | ||| | | || | || | | Sbjct 1796514 TTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG----AT 1796569 Query 118913 GGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTC 118966 || ||| || |||| |||| ||||||||| ||||||||| ||||||||||| Sbjct 1796570 GGACTTG---CGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTC 1796626 Query 118967 ACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACC 119026 ||| | || | || || || || | ||||| | ||| | ||| | || Sbjct 1796627 ACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTT 1796686 Query 119027 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 119086 || |||||| ||||||||||| ||||| ||||||||||| ||| ||| || || || Sbjct 1796687 CTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGC 1796746 Query 119087 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 119146 ||| | || || | || || || || | || | || || | || ||| ||||| Sbjct 1796747 GCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTG 1796806 Query 119147 CCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTAC 119200 ||| || || ||||| | || | | || | | || |||| |||| | || Sbjct 1796807 CCAAGGCTCAAGGTAGATAGCAAAAGCACC---AGGTCGCTTGTTACCACCCTGATCAAC 1796863 Query 119201 ATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATT 119260 || | |||||| ||| || ||||| ||||| |||| | ||| | |||| || || Sbjct 1796864 GTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTT 1796923 Query 119261 TGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || || ||| | | |||| | || |||| | | ||||||||| Sbjct 1796924 GGTACCAGCAATGTAGGAGCC--AGTGGCACGGATTCGGTGGGCATTGAGACCAATACCA 1796981 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || ||| ||| || || || || | |||| | | ||||| || || || | Sbjct 1796982 CCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTG 1797041 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || |||| | | | | |||||| || | || || || |||||||||||| Sbjct 1797042 TCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTG 1797101 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCA 119496 ||||| || || | || ||| ||| | | |||| |||||| || ||| ||||||| Sbjct 1797102 AAGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTGTATGTCTCCA 1797159 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 |||| ||| || || || ||||| || || || ||||| | ||||| || | Sbjct 1797160 AGACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAG 1797219 Query 119557 GTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 119616 | ||| | | | || || | | | ||||||| |||||| ||||||| | Sbjct 1797220 GACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGC 1797279 Query 119617 CAAAATA 119623 |||| || Sbjct 1797280 CAAAGTA 1797286 >seq33 Length=5643559 Score = 143 bits (158), Expect = 3e-29 Identities = 528/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 146919 TAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 146860 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | | | | ||| ||||| Sbjct 146859 AAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGAC-GAGTAGACG 146801 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||||||||||| |||| | ||||||||| || | ||| ||| Sbjct 146800 GTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCACA 146741 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || || |||| ||| ||||||| || || || | | |||| | || Sbjct 146740 GGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCCTG 146681 Query 129967 AATGGTCTCCGTGCCAG---GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | | | |||||| | |||||| || Sbjct 146680 GATCATCTGCTTGCTAGCACGGCCCTTGAG-ATGGGAGTGAAGAAGGCA--GGCAAAGTC 146624 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || ||||||||||| |||||||| || || |||||| || ||| |||||||| Sbjct 146623 GGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAG 146564 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 146563 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 146504 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 | ||||| |||| ||||| | ||||||| | | | |||| | | ||| | Sbjct 146503 AGCAGCGAAGGCAACCAGACGTTGGGCAAAGG-TAGAGTCCTTGTCCTGGATCCATCGAA 146445 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || || | ||| | | || | ||||| | Sbjct 146444 TGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGG 146385 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | | | || || |||||||| | || ||||| ||||| || ||| || | Sbjct 146384 TTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAA 146325 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | || | ||||||| | || || || ||||| ||||| Sbjct 146324 TATTCTCCATCAT-GATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTC- 146267 Query 130382 TCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | || ||| | | | || ||||| ||||| ||||| || |||| || || || Sbjct 146266 GCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAGGC 146207 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 ||||| | ||||| ||| || | | ||| || | ||||| |||| || Sbjct 146206 AAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGGAG 146147 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| | |||||| |||||||| Sbjct 146146 ATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 146114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434597025680