Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 138 3e-27 seq22 125 2e-23 seq44 114 4e-20 >seq2 Length=4137638 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||||| || ||||| || || || Sbjct 2555979 CATACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTC 2555920 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || || ||||| || ||||| ||||| || || || || ||||| Sbjct 2555919 AGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGG 2555860 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | ||||||| || Sbjct 2555859 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTC 2555800 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | ||| | || |||||||| || || || || || || ||||| Sbjct 2555799 GACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 2555749 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | || |||||||| ||||| |||||||| || || ||||| || Sbjct 2556210 TTACTGACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTA 2556151 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 2556150 GTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 2556091 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATG 140682 ||| ||||| || || || || ||||| || ||| || || || ||||| | || || Sbjct 2556090 AGGGGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACGTTGTCAATAGTGTCGCTTG 2556032 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | |||||||| || || || || || ||||||||||| Sbjct 2556031 ATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 2555977 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 2555469 CATACCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 2555410 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || ||||| || || | || ||||| ||||| Sbjct 2555409 AGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGG 2555350 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | || || | || Sbjct 2555349 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTC 2555290 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| | || || || || || ||||| Sbjct 2555289 AACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 2555239 Score = 114 bits (126), Expect = 4e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || || || || || || || | Sbjct 2555755 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGT 2555696 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 2555695 AGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 2555636 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||| || || | || || || || || | ||| || | Sbjct 2555635 CGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGG 2555576 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 2555575 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 2555533 >seq22 Length=6460479 Score = 125 bits (138), Expect = 2e-23 Identities = 433/671 (65%), Gaps = 7/671 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| | || || || |||| ||| | || ||||| Sbjct 4232171 GATATCATCGCCAACGACCAGGGTAACCGCACTACCCCCTCATTCGTCGGTTTCACCGAC 4232112 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | ||||| ||| | || || || || | || || || | || || Sbjct 4232111 ACCGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 4232052 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || |||||| | || ||| | | || | || | | | || | | Sbjct 4232051 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 4231994 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 || | || || || || || || | | | | ||| | || || || | || |||| Sbjct 4231993 ATATGAAGCACTTCCCCTTCACCATCAT-CGACAAGGC--TGGCAAGCCCGTCATCGAGG 4231937 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 |||| | || ||||| | || | || ||||| || || || | ||| | | Sbjct 4231936 TTGAGTTCAAGGGTGAGAAGAAGAACTTCACTCCCGAGGAGATCTCTGCCATGATCCTCA 4231877 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | |||||| | || | ||||| || || | | |||||| | | Sbjct 4231876 CCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCTGTTGTCA 4231817 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || || ||||| || || || | |||||| || || || |||||||| ||| | Sbjct 4231816 CCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTCATCG 4231757 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || ||||| |||| || || || || || ||||| || ||||| || || | Sbjct 4231756 CCGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTACGGTC 4231697 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | | ||| || || | || || || ||| | ||||||||||| | Sbjct 4231696 TCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCT 4231637 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || |||| ||||| || || || || || | ||||| || | Sbjct 4231636 TCGATGTTTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGCG 4231577 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || || | ||||| || || || || || ||||| || || || ||||| |||| Sbjct 4231576 ACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAGCCACTTCGTTAACGAAT 4231517 Query 349920 TTAAGCGTCAA 349930 | || ||| || Sbjct 4231516 TCAAACGTAAA 4231506 Score = 105 bits (116), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | |||||||| || |||||||| || Sbjct 4508104 CGCGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTGTTC 4508048 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || || | ||| |||||||||||| Sbjct 4508047 AGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCT 4507988 Query 377578 CCAGGATTGACAATAGC 377594 ||||| || || | ||| Sbjct 4507987 CCAGGGTTCACGAAAGC 4507971 >seq44 Length=1303881 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 485402 CATACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 485461 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 485462 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 485521 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || ||||| | || || | || Sbjct 485522 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 485581 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 485582 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 485632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252885692634