Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq73 268 1e-66 seq1 170 2e-37 >seq73 Length=2503951 Score = 268 bits (296), Expect = 1e-66 Identities = 499/727 (69%), Gaps = 18/727 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||||||| ||||| ||| || | ||| | |||| ||| || || || | || || Sbjct 1797167 GCGTGTCTTGGAGACATACAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCAC 1797108 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| ||| || ||| | || |||||| |||| | ||||| Sbjct 1797107 CCTCTTCAACGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGATATGAA 1797048 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || ||||| ||||| || || |||||| |||||| || |||||| Sbjct 1797047 GGAGGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGAT 1796988 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| ||| || | ||| | | || ||||||| | ||| | || Sbjct 1796987 GGCTGGTGGTATTGGTCTCAA-TGCCC-ACCGAATCCGTGCCACTGGCTCCTACATTGCT 1796930 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| || | || | || |||||||| || |||||||||||||| ||| Sbjct 1796929 GGTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCC 1796870 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| | ||||||||| ||||| || | || || |||||||| ||||| Sbjct 1796869 CGCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCT 1796810 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || | | ||||| || || || || ||| || ||| | || ||| | Sbjct 1796809 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 1796750 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||| |||||||| || || ||||| || ||||| |||||| | || ||| Sbjct 1796749 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAG 1796690 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTA 53769 ||| ||| |||||| ||| |||||||| ||||||||||| || | | | | || ||| Sbjct 1796689 AAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTG-CTA 1796631 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAA 53823 |||||| |||||| | | | || || |||| | || | |||| ||| Sbjct 1796630 CGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGGGTCGC----- 1796576 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 ||| ||||||| | || | ||| |||| |||||| || |||| ||||| || Sbjct 1796575 -AAGTCCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1796517 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| ||||||||| | ||| |||||||||||||||||| |||| Sbjct 1796516 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1796457 Query 53944 CGTCATC 53950 | |||| Sbjct 1796456 CACCATC 1796450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC---ATGA 55784 |||||| ||||| ||| || ||||||||| | ||| | | | ||| | ||| Sbjct 1795689 TCAAGGCTCTTTACAAGACTGTTTGGGAGATTTCTCAGC---GCCAGGTTGTCCAGATGG 1795633 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||| || || ||||| | |||||| ||||||||||| || ||||| |||| || ||| Sbjct 1795632 CTGCCGACCGAGGTGCTTTCATCGATCAGTCCCAGTCCCTCAACATTCACATGAAGGATC 1795573 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | ||| |||| | | | |||||||| ||| |||||| || |||||||| | Sbjct 1795572 CCACGATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACTG 1795513 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||| || || || Sbjct 1795512 GCATGTACTACCTTCGCAC 1795494 >seq1 Length=4664806 Score = 170 bits (188), Expect = 2e-37 Identities = 225/310 (73%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| |||||| || || |||||||||| || |||||||| |||||| ||||| || Sbjct 2933826 GGTGATAGGCGGGTAAAGATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGA 2933767 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | |||||| ||||||||| ||| | |||||| | ||||||||||| ||| Sbjct 2933766 GAACCGAAGTTTCCACTGGGCTCCAAGCAGTTGATGTTGTTTGAACCCACAAAGTTCTGA 2933707 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 || | | | || || ||| || | |||||| ||||| |||||||| || || Sbjct 2933706 GCAAGGCCTATGATGGTCTGTTGAAGAGACTGCTCACCGTGGTGGTACGCCGTTTGTTCG 2933647 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530 | ||| || || | || | | | |||||| | || |||| || ||| | |||| || Sbjct 2933646 GACACATAACCAGACAATTCAACAACCTTCTTATCCTTGAC--CAAGTTTCTTTTGAAGC 2933589 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 | ||||| || ||||||||||||| ||||| | ||||||| ||| ||||| || | Sbjct 2933588 AAGCATAGATAACCTTGCGCTGACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATC 2933529 Query 117591 GCTTGATGTC 117600 || || |||| Sbjct 2933528 GCATGTTGTC 2933519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || ||||||||||| |||| ||| |||| || ||||| |||| | Sbjct 2933967 CCTGTACCGATACCATCGGCACCGTTGACGAGAACCATGGGCAGGATTGGGGCATAAACC 2933908 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992 ||| || | || | || || || || | | || || ||| ||| || Sbjct 2933907 ATCGGTTCAATCTTCTTGCCATCTTCGTA---GTGATGGATAA--GATTTGGCTCATCCA 2933853 Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTG--AAGATGTATCGGGAGCT 152048 || | ||| ||| || | || ||| | | | ||| | |||||||| || | || Sbjct 2933852 TGGGGTGGAAGATCTTGCGGG-CAAAGGG-TGATAGGCGGGTAAAGATGTAACGAGGACT 2933795 Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| |||||| || || || | || || | |||| |||||| | | ||| Sbjct 2933794 GGCAGCATCAGAGCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGCTCCAAGCAGTT 2933735 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | ||||| || |||||||| | | || || || ||| | Sbjct 2933734 GATGTTGTTTGAACCCACAAAGTTCTGAGCAAGGCCTATGATGGTCTGTTGAAGAGACTG 2933675 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||||| |||||||| || || | | || || | ||| | | |||||| | Sbjct 2933674 CTCACCGTGGTGGTACGCCGTTTGTTCGGACACATAACCAGACAATTCAACAACCTTCTT 2933615 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| | || ||| | |||| || || || || ||||||||||| || || || Sbjct 2933614 ATCCTTGACCAAGTTTCTTTTGAAGCAAGCATAGATAACCTTGCGCTGACCAGGCTTGAA 2933555 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||| |||| ||| || || || ||| || |||| Sbjct 2933554 ACCATCCAAAACGGACGGGATGGATCGCATGTTGTC 2933519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215466464400