Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10]
78 sequences; 43,168,069 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq73 268 1e-66
seq1 170 2e-37
>seq73
Length=2503951
Score = 268 bits (296), Expect = 1e-66
Identities = 499/727 (69%), Gaps = 18/727 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
||||||| ||||| ||| || | ||| | |||| ||| || || || | || ||
Sbjct 1797167 GCGTGTCTTGGAGACATACAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCAC 1797108
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
||| |||||||||||||| ||| || ||| | || |||||| |||| | |||||
Sbjct 1797107 CCTCTTCAACGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGATATGAA 1797048
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||| ||| || ||||| ||||| || || |||||| |||||| || ||||||
Sbjct 1797047 GGAGGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGAT 1796988
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470
| | |||||||| ||| || | ||| | | || ||||||| | ||| | ||
Sbjct 1796987 GGCTGGTGGTATTGGTCTCAA-TGCCC-ACCGAATCCGTGCCACTGGCTCCTACATTGCT 1796930
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || ||||| || | || | || |||||||| || |||||||||||||| |||
Sbjct 1796929 GGTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCC 1796870
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
|| ||||| | ||||||||| ||||| || | || || |||||||| |||||
Sbjct 1796869 CGCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCT 1796810
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
|||||||| || | | ||||| || || || || ||| || ||| | || ||| |
Sbjct 1796809 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 1796750
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
||| ||| |||||||| || || ||||| || ||||| |||||| | || |||
Sbjct 1796749 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAG 1796690
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTA 53769
||| ||| |||||| ||| |||||||| ||||||||||| || | | | | || |||
Sbjct 1796689 AAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTG-CTA 1796631
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAA 53823
|||||| |||||| | | | || || |||| | || | |||| |||
Sbjct 1796630 CGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGGGTCGC----- 1796576
Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883
||| ||||||| | || | ||| |||| |||||| || |||| ||||| ||
Sbjct 1796575 -AAGTCCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1796517
Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
|| || | |||| ||||||||| | ||| |||||||||||||||||| ||||
Sbjct 1796516 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1796457
Query 53944 CGTCATC 53950
| ||||
Sbjct 1796456 CACCATC 1796450
Score = 89.7 bits (98), Expect = 6e-13
Identities = 140/199 (70%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC---ATGA 55784
|||||| ||||| ||| || ||||||||| | ||| | | | ||| | |||
Sbjct 1795689 TCAAGGCTCTTTACAAGACTGTTTGGGAGATTTCTCAGC---GCCAGGTTGTCCAGATGG 1795633
Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844
||| || || ||||| | |||||| ||||||||||| || ||||| |||| || |||
Sbjct 1795632 CTGCCGACCGAGGTGCTTTCATCGATCAGTCCCAGTCCCTCAACATTCACATGAAGGATC 1795573
Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904
| | ||| |||| | | | |||||||| ||| |||||| || |||||||| |
Sbjct 1795572 CCACGATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACTG 1795513
Query 55905 GTATGTACTATCTGCGGAC 55923
| |||||||| || || ||
Sbjct 1795512 GCATGTACTACCTTCGCAC 1795494
>seq1
Length=4664806
Score = 170 bits (188), Expect = 2e-37
Identities = 225/310 (73%), Gaps = 4/310 (1%)
Strand=Plus/Minus
Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352
|||| |||||| || || |||||||||| || |||||||| |||||| ||||| ||
Sbjct 2933826 GGTGATAGGCGGGTAAAGATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGA 2933767
Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412
| |||||| | |||||| ||||||||| ||| | |||||| | ||||||||||| |||
Sbjct 2933766 GAACCGAAGTTTCCACTGGGCTCCAAGCAGTTGATGTTGTTTGAACCCACAAAGTTCTGA 2933707
Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472
|| | | | || || ||| || | |||||| ||||| |||||||| || ||
Sbjct 2933706 GCAAGGCCTATGATGGTCTGTTGAAGAGACTGCTCACCGTGGTGGTACGCCGTTTGTTCG 2933647
Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530
| ||| || || | || | | | |||||| | || |||| || ||| | |||| ||
Sbjct 2933646 GACACATAACCAGACAATTCAACAACCTTCTTATCCTTGAC--CAAGTTTCTTTTGAAGC 2933589
Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590
| ||||| || ||||||||||||| ||||| | ||||||| ||| ||||| || |
Sbjct 2933588 AAGCATAGATAACCTTGCGCTGACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATC 2933529
Query 117591 GCTTGATGTC 117600
|| || ||||
Sbjct 2933528 GCATGTTGTC 2933519
Score = 96.9 bits (106), Expect = 4e-15
Identities = 299/456 (66%), Gaps = 14/456 (3%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| |||||||| || || ||||||||||| |||| ||| |||| || ||||| |||| |
Sbjct 2933967 CCTGTACCGATACCATCGGCACCGTTGACGAGAACCATGGGCAGGATTGGGGCATAAACC 2933908
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992
||| || | || | || || || || | | || || ||| ||| ||
Sbjct 2933907 ATCGGTTCAATCTTCTTGCCATCTTCGTA---GTGATGGATAA--GATTTGGCTCATCCA 2933853
Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTG--AAGATGTATCGGGAGCT 152048
|| | ||| ||| || | || ||| | | | ||| | |||||||| || | ||
Sbjct 2933852 TGGGGTGGAAGATCTTGCGGG-CAAAGGG-TGATAGGCGGGTAAAGATGTAACGAGGACT 2933795
Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108
||| ||||| |||||| || || || | || || | |||| |||||| | | |||
Sbjct 2933794 GGCAGCATCAGAGCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGCTCCAAGCAGTT 2933735
Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168
|| |||||| | ||||| || |||||||| | | || || || ||| |
Sbjct 2933734 GATGTTGTTTGAACCCACAAAGTTCTGAGCAAGGCCTATGATGGTCTGTTGAAGAGACTG 2933675
Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228
||||||||||| |||||||| || || | | || || | ||| | | |||||| |
Sbjct 2933674 CTCACCGTGGTGGTACGCCGTTTGTTCGGACACATAACCAGACAATTCAACAACCTTCTT 2933615
Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288
||| | || ||| | |||| || || || || ||||||||||| || || ||
Sbjct 2933614 ATCCTTGACCAAGTTTCTTTTGAAGCAAGCATAGATAACCTTGCGCTGACCAGGCTTGAA 2933555
Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||| |||| ||| || || || ||| || ||||
Sbjct 2933554 ACCATCCAAAACGGACGGGATGGATCGCATGTTGTC 2933519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215466464400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |