Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq73 336 2e-87 seq2 185 1e-41 seq44 176 5e-39 seq1 159 4e-34 seq12 129 7e-25 >seq73 Length=2503951 Score = 336 bits (372), Expect = 2e-87 Identities = 945/1428 (66%), Gaps = 56/1428 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || ||| || ||| | || | ||| | ||||||||||| || |||| Sbjct 1795815 AACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCG 1795874 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | || || || || ||||| ||| | | | ||| || Sbjct 1795875 TTGTTGCCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGACTGTTA 1795934 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAAC---CCCAACG 80532 || | |||| |||| | |||||| || || || || | ||| | || | Sbjct 1795935 CGGATACCGTTAGTCTTAACATCCTCTCG-AAGGCTCTCCCAGTCCCAAAGGTCGGAAGG 1795993 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| |||||||||| ||| | ||| ||||| || || ||||| ||| ||| | Sbjct 1795994 CT-TGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAACCCTTGAAGG 1796052 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAA 80649 | ||| || |||||| |||||||| || |||| || | ||||| ||||| || Sbjct 1796053 TAGAGTAGGGACCCTCCTCCTTGGCCAACTG-CACGGAGGCAGTGAGGGCAGCGTGGTAG 1796111 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | | | |||| ||| ||||| | || || | Sbjct 1796112 ATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACTCGAAGGGCATGCGC 1796171 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | | ||| | ||||| || ||||| || || | |||| || ||||| ||| || Sbjct 1796172 AGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATAGGTCGGTGACGCATG 1796231 Query 80770 TTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || | | || ||||| | | ||||| ||| |||||||| ||||| ||| Sbjct 1796232 TT-GCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATGATCTTGTTCAAGTT 1796290 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC-CTTCA 80887 ||| ||||||| | | || | ||| || |||| || || || | || | ||| Sbjct 1796291 GCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATC--ATAGCAAGCCTCATCA 1796348 Query 80888 CA-------AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG-- 80938 | || || || ||| ||||| || || ||||| || || ||||| |||| Sbjct 1796349 TAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGG 1796408 Query 80939 -CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGT 80995 || | ||| ||||| ||| || ||||||| |||||| ||| || || || |||| Sbjct 1796409 GCA-CAGTA--CTCGATGATCTCAGTGCACAGATTAGAG--CTTCGGATGGTGCCGAGGT 1796463 Query 80996 TTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCT 81055 | |||||||| |||| ||| || || |||||||| |||| | ||| | ||||||| Sbjct 1796464 TCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCT 1796523 Query 81056 CGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATT 81115 || ||| | || ||||||||| | ||||| || | ||||||| |||||| | Sbjct 1796524 CGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCCT 1796583 Query 81116 TGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTG 81174 | ||||| | | ||||| |||| | || |||| |||||| | ||| | | Sbjct 1796584 TACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGT-CGGCA 1796642 Query 81175 AGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC 81234 || | ||||||||||| |||||||| ||| ||| || || ||||| ||| |||| Sbjct 1796643 AGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTC 1796702 Query 81235 ATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCA 81294 |||||| |||||||||||||||||| ||||||||||||| ||| ||||||| | | Sbjct 1796703 ATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTA 1796762 Query 81295 CCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATAC 81354 || ||||| || | || || || || | || || || ||||| ||||| || || Sbjct 1796763 CCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAG 1796822 Query 81355 ACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCG 81408 | || | | || | |||| | |||||||| | ||||| |||||||| | Sbjct 1796823 ATAGCAAAAGCACCAGGTCGCTTGTTA---CCACCCTGATCAACGTAGCGGGCAGTGTTG 1796879 Query 81409 TTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGC 81468 || || ||||| | |||||| | | ||| | || |||||| ||||| | || Sbjct 1796880 TTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAG 1796939 Query 81469 GACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || || |||| || | | || |||| ||||| || ||||| | | ||| |||| Sbjct 1796940 GAGCCAGTGGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAA 1796997 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 || ||||| || | ||| ||||| || || || ||||| || | ||||| |||| Sbjct 1796998 TCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAA 1797057 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGG 81641 |||||| || || | ||| || ||||| || || ||||| || || || Sbjct 1797058 CCAAGAAGCATGAGGAAAGCTGGGG-----TTGAGGGGTACCAGCGTTGAAGAGGGTGGG 1797112 Query 81642 GGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAAT 81701 || || || |||| | | | ||||| |||| || || ||| ||| || ||| Sbjct 1797113 GGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTGTATGTCTCCAAGACACGCTCAAT 1797172 Query 81702 ATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| ||||| ||||| |||| |||||||| | ||||| ||| || Sbjct 1797173 ATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAGG 1797220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 1795488 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 1795547 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | || |||| ||||| || ||||| |||||| Sbjct 1795548 ATGCTGGTGATCTTGCCCATCGTGGGATCCTTCATGTGAATGTTGAGGGACTGGGACTGA 1795607 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||||||| || || || || ||||| Sbjct 1795608 TCGATGAAAGCACCTCGGTCGGCAGCCAT 1795636 >seq2 Length=4137638 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 2555533 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCGAC 2555592 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| |||||||| ||||| ||||| || || Sbjct 2555593 AACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGATC 2555652 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| || ||||| || |||| |||||| Sbjct 2555653 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAA 2555712 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||| | || ||||| ||||| Sbjct 2555713 TCCACACTTCATCTCGTCCTCCGCCTTCGTGGTGG 2555747 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 2555236 ATCATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 2555295 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || ||||| ||| Sbjct 2555296 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 2555355 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| ||||| ||||| || ||||||| || ||||| | || || Sbjct 2555356 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTAC 2555415 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || ||||| ||| | || || || ||||| Sbjct 2555416 AACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGG 2555465 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| || |||||||| || ||| | Sbjct 2555977 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 2556036 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 2556037 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 2556096 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| || ||||| | ||| || | ||| ||||| || Sbjct 2556097 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGC-GACTACAA 2556155 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| || || ||||| || || | || ||||| || || || Sbjct 2556156 TATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGTCA 2556206 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| || || || || | || || |||||| | Sbjct 2555749 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 2555808 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| |||||||| ||||| Sbjct 2555809 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 2555868 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||| | || ||||| | ||||| || Sbjct 2555869 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 2555928 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || | ||||| || ||||| Sbjct 2555929 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 2555975 >seq44 Length=1303881 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 485635 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 485576 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| ||||| || ||| Sbjct 485575 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 485516 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 485515 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 485457 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||||| || || ||| | || || || ||||| Sbjct 485456 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGTGGTGG 485406 >seq1 Length=4664806 Score = 159 bits (176), Expect = 4e-34 Identities = 235/329 (71%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| ||||| || ||| ||| || |||||||| ||||||||||| || || Sbjct 2933524 CATGCGATCCATCCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTA 2933583 Query 32019 CGCCTGCCTCAAGAAGAACCT--GTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC 32076 || ||| |||| ||||| || ||| || || | |||||| | | |||| || || Sbjct 2933584 TGCTTGCTTCAA-AAGAAACTTGGTCAAG-GATAAGAAGGTTGTTGAATTGTCTGGTTAT 2933641 Query 32077 GTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAAC 32136 ||| | || |||||||| || |||||||| ||| ||| || || ||||| | | Sbjct 2933642 GTGTCCGAACAAACGGCGTACCACCACGGTGAGCAGTCTCTTCAACAGACCATCATAGGC 2933701 Query 32137 CTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTT 32196 ||||||||||||||||| ||| |||| ||| | |||| | ||||| |||| | || Sbjct 2933702 CTTGCTCAGAACTTTGTGGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTC 2933761 Query 32197 GGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC 32256 || | || || ||||||||| |||||||| || | ||||||||||| ||||| || Sbjct 2933762 GGTTCTCGACTTGCCGGTGGCTCTGATGCTGCCAGTCCTCGTTACATCTTTACCCGCCTA 2933821 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCC 32285 |||| | | |||||||| ||| |||| Sbjct 2933822 TCACCCTTTGCCCGCAAGATCTTCCACCC 2933850 >seq12 Length=4746347 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 3789803 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 3789862 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 3789863 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 3789922 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 3789923 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 3789982 Query 27595 G 27595 | Sbjct 3789983 G 3789983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309843947360