Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 seq44 95.1 8e-15 >seq2 Length=4137638 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| || ||||| || || || || || | Sbjct 2555977 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 2556036 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || ||| ||||| || ||| | || || || || Sbjct 2556037 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 2556096 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||| |||| |||||||| |||| ||||| Sbjct 2556097 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAT 2556156 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2556157 ATCCAGAAGGAGTCTAC 2556173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || || ||||| ||||| ||||| || | Sbjct 2555239 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 2555298 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | || ||||| || || | || || || || Sbjct 2555299 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATCCCTCCTGACCA 2555357 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || || | ||||| | |||||||| Sbjct 2555358 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAA 2555417 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 2555418 CATCCAGAAGGAGTCCAC 2555435 >seq44 Length=1303881 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || |||||||| || || || || || | Sbjct 485632 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 485573 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 485572 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 485513 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || || || || | ||||| | |||| |||||| Sbjct 485512 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 485453 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 485452 ATCCAGAAGGAGTCCAC 485436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009278679624